Evidence map›Paper›PMID 32081916›Full record

ArticleCommunications biology2020

Binding of the periplakin linker requires vimentin acidic residues D176 and E187.

Elena Odintsova, Fiyaz Mohammed, Catharine Trieber, Penelope Rodriguez-Zamora, Caezar Al-Jassar, Tzu-Han Huang, Claudia Fogl, Timothy Knowles, Pooja Sridhar, Jitendra Kumar and 3 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Recent insight into intermediate filament structure.Current opinion in cell biology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 3 countries.

Elena Odintsova *Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, B15 2TT, UK.
Fiyaz Mohammed *Institute of Immunology and Immunotherapy, University of Birmingham, Birmingham, B15 2TT, UK.
Catharine Trieber *Department of Biochemistry, Faculty of Medicine & Dentistry, 474 Medical Sciences Building, University of Alberta, Edmonton, Alberta, T6G 2H7, Canada.ORCID http://orcid.org/0000-0002-1336-1126
Penelope Rodriguez-ZamoraInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, B15 2TT, UK.ORCID http://orcid.org/0000-0002-0963-7046
Caezar Al-JassarInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, B15 2TT, UK.
Tzu-Han HuangSchool of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK.
Claudia FoglInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, B15 2TT, UK.
Timothy KnowlesSchool of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK.ORCID http://orcid.org/0000-0002-6632-0985
Pooja SridharSchool of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK.
Jitendra KumarDepartment of Biochemistry, Faculty of Medicine & Dentistry, 474 Medical Sciences Building, University of Alberta, Edmonton, Alberta, T6G 2H7, Canada.
Mark JeevesInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, B15 2TT, UK.
Martyn ChidgeyInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, B15 2TT, UK. M.A.Chidgey@bham.ac.uk.
Michael OverduinDepartment of Biochemistry, Faculty of Medicine & Dentistry, 474 Medical Sciences Building, University of Alberta, Edmonton, Alberta, T6G 2H7, Canada.ORCID http://orcid.org/0000-0002-3114-6585
University of Birmingham · GBUniversity of Alberta · CABirmingham Research Park · GB

Funding

Biotechnology and Biological Sciences Research Council BB/P009840/1Wellcome TrustWellcome Trust 094303/Z/10/ZWellcome Trust 099266/Z/12/Z
6 · The paper itself

Abstract

Plakin proteins form connections that link the cell membrane to the intermediate filament cytoskeleton. Their interactions are mediated by a highly conserved linker domain through an unresolved mechanism. Here analysis of the human periplakin linker domain structure reveals a bi-lobed module transected by an electropositive groove. Key basic residues within the periplakin groove are vital for co-localization with vimentin in human cells and compromise direct binding which also requires acidic residues D176 and E187 in vimentin. We propose a model whereby basic periplakin linker domain residues recognize acidic vimentin side chains and form a complementary binding groove. The model is shared amongst diverse linker domains and can be used to investigate the effects of pathogenic mutations in the desmoplakin linker associated with arrhythmogenic right ventricular cardiomyopathy. Linker modules either act solely or collaborate with adjacent plakin repeat domains to create strong and adaptable tethering within epithelia and cardiac muscle.

Indexed as

Amino Acids, AcidicAmino Acid SequenceAspartic AcidGlutamic AcidHeLa CellsHumansIntermediate FilamentsModels, MolecularMutation, MissensePlakinsProtein BindingProtein Interaction Domains and MotifsProtein Structure, QuaternaryVimentinAmino Acids, AcidicAspartic AcidGlutamic AcidPlakinsPPL protein, humanVimentin

Identifiers

PMID32081916
PMCPMC7035337
OpenAlexW3007701756

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.