Evidence map›Paper›PMID 32081911›Full record

ArticleScientific reports2020

iLoF: An intelligent Lab on Fiber Approach for Human Cancer Single-Cell Type Identification.

Joana S Paiva, Pedro A S Jorge, Rita S R Ribeiro, Meritxell Balmaña, Diana Campos, Stefan Mereiter, Chunsheng Jin, Niclas G Karlsson, Paula Sampaio, Celso A Reis and 1 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 4 countries.

Joana S PaivaINESC TEC - INESC Technology and Science, Porto, Portugal.ORCID http://orcid.org/0000-0003-0413-587X
Pedro A S JorgeINESC TEC - INESC Technology and Science, Porto, Portugal.
Rita S R RibeiroINESC TEC - INESC Technology and Science, Porto, Portugal.
Meritxell Balmañai3s - Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal.ORCID http://orcid.org/0000-0001-6587-3900
Diana Camposi3s - Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal.
Stefan MereiterFaculty of Engineering, University of Porto, Porto, Portugal.
Chunsheng JinDepartment of Medical Biochemistry and Cell Biology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.ORCID http://orcid.org/0000-0002-0229-102X
Niclas G KarlssonDepartment of Medical Biochemistry and Cell Biology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.ORCID http://orcid.org/0000-0002-3045-2628
Paula Sampaioi3s - Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal.ORCID http://orcid.org/0000-0003-1148-2159
Celso A Reisi3s - Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal.ORCID http://orcid.org/0000-0002-0286-6639
João P S CunhaINESC TEC - INESC Technology and Science, Porto, Portugal. jpcunha@inesctec.pt.
Universidade do Porto · PTInstitute of Molecular Biotechnology · ATUniversity of Gothenburg · SEInstituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento · PT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

With the advent of personalized medicine, there is a movement to develop "smaller" and "smarter" microdevices that are able to distinguish similar cancer subtypes. Tumor cells display major differences when compared to their natural counterparts, due to alterations in fundamental cellular processes such as glycosylation. Glycans are involved in tumor cell biology and they have been considered to be suitable cancer biomarkers. Thus, more selective cancer screening assays can be developed through the detection of specific altered glycans on the surface of circulating cancer cells. Currently, this is only possible through time-consuming assays. In this work, we propose the "intelligent" Lab on Fiber (iLoF) device, that has a high-resolution, and which is a fast and portable method for tumor single-cell type identification and isolation. We apply an Artificial Intelligence approach to the back-scattered signal arising from a trapped cell by a micro-lensed optical fiber. As a proof of concept, we show that iLoF is able to discriminate two human cancer cell models sharing the same genetic background but displaying a different surface glycosylation profile with an accuracy above 90% and a speed rate of 2.3 seconds. We envision the incorporation of the iLoF in an easy-to-operate microchip for cancer identification, which would allow further biological characterization of the captured circulating live cells.

Indexed as

Artificial IntelligenceSingle-Cell AnalysisCell Line, TumorHumansImage Processing, Computer-AssistedNeoplasmsOptical FibersOptical TweezersProbabilitySignal Processing, Computer-Assisted

Identifiers

PMID32081911
PMCPMC7035380
OpenAlexW3008024492

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.