Evidence map›Paper›PMID 32081880›Full record

ArticleScientific reports2020

Hyphal network whole field imaging allows for accurate estimation of anastomosis rates and branching dynamics of the filamentous fungus Podospora anserina.

J Dikec, A Olivier, C Bobée, Y D'Angelo, R Catellier, P David, F Filaine, S Herbert, Ch Lalanne, H Lalucque and 6 more

Abstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
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  4. Review
  5. Enhancing the Yield ofJournal of fungi (Basel, Switzerland) · 2025
    Article
  6. Article
  7. Article
  8. Article
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  12. Article
  13. Review
  14. Article
  15. Advances and Challenges in FluorescenceFrontiers in microbiology · 2022
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

J DikecUniversité de Paris, Laboratoire Interdisciplinaire des Energies de Demain (LIED), UMR 8236 CNRS, F-75013, Paris, France.
A OlivierUniversité Paris-Saclay, Laboratoire de Mathématiques d'Orsay, CNRS, F-91405, Orsay, France.
C BobéeUniversité de Paris, Laboratoire Interdisciplinaire des Energies de Demain (LIED), UMR 8236 CNRS, F-75013, Paris, France.ORCID http://orcid.org/0000-0002-9905-269X
Y D'AngeloUniversité Côte d'Azur, Laboratoire Mathématiques & Interactions J. A. Dieudonné, UMR 7351 CNRS, F-06108, Nice, France.
R CatellierUniversité Côte d'Azur, Laboratoire Mathématiques & Interactions J. A. Dieudonné, UMR 7351 CNRS, F-06108, Nice, France.
P DavidUniversité de Paris, Laboratoire Interdisciplinaire des Energies de Demain (LIED), UMR 8236 CNRS, F-75013, Paris, France.
F FilaineUniversité de Paris, Laboratoire Interdisciplinaire des Energies de Demain (LIED), UMR 8236 CNRS, F-75013, Paris, France.
S HerbertInstitut Pasteur, Image Analysis Hub, C2RT, F-75015, Paris, France.ORCID http://orcid.org/0000-0002-3267-9156
Ch LalanneUniversité de Paris, Laboratoire Interdisciplinaire des Energies de Demain (LIED), UMR 8236 CNRS, F-75013, Paris, France.
H LalucqueUniversité de Paris, Laboratoire Interdisciplinaire des Energies de Demain (LIED), UMR 8236 CNRS, F-75013, Paris, France.
L MonasseUniversité Côte d'Azur, Laboratoire Mathématiques & Interactions J. A. Dieudonné, UMR 7351 CNRS, F-06108, Nice, France.ORCID http://orcid.org/0000-0001-8090-9107
M RieuUniversité de Paris, Laboratoire Interdisciplinaire des Energies de Demain (LIED), UMR 8236 CNRS, F-75013, Paris, France.
G Ruprich-RobertUniversité de Paris, Laboratoire Interdisciplinaire des Energies de Demain (LIED), UMR 8236 CNRS, F-75013, Paris, France.ORCID http://orcid.org/0000-0003-3679-428X
A VéberCMAP, CNRS, I.P. Paris, F-91128, Palaiseau, France.
F Chapeland-Leclerc *Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain (LIED), UMR 8236 CNRS, F-75013, Paris, France.ORCID http://orcid.org/0000-0002-6672-5501
E Herbert *Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain (LIED), UMR 8236 CNRS, F-75013, Paris, France. eric.herbert@univ-paris-diderot.fr.ORCID http://orcid.org/0000-0001-6596-0895

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The success of filamentous fungi in colonizing most natural environments can be largely attributed to their ability to form an expanding interconnected network, the mycelium, or thallus, constituted by a collection of hyphal apexes in motion producing hyphae and subject to branching and fusion. In this work, we characterize the hyphal network expansion and the structure of the fungus Podospora anserina under controlled culture conditions. To this end, temporal series of pictures of the network dynamics are produced, starting from germinating ascospores and ending when the network reaches a few centimeters width, with a typical image resolution of several micrometers. The completely automated image reconstruction steps allow an easy post-processing and a quantitative analysis of the dynamics. The main features of the evolution of the hyphal network, such as the total length L of the mycelium, the number of "nodes" (or crossing points) N and the number of apexes A, can then be precisely quantified. Beyond these main features, the determination of the distribution of the intra-thallus surfaces (S

Indexed as

Fungal ProteinsFungiGene Expression Regulation, FungalHyphaeImage Processing, Computer-AssistedMicroscopyModels, BiologicalMyceliumPodosporaSpores, FungalFungal Proteins

Identifiers

PMID32081880
PMCPMC7035296

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.