Evidence map›Paper›PMID 32080176›Full record

ArticleNature communications2020

Relaxed sequence constraints favor mutational freedom in idiosyncratic metazoan mitochondrial tRNAs.

Bernhard Kuhle, Joseph Chihade, Paul Schimmel

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 27 citations in OpenAlex.

  1. Gene models of fourmicroPublication biology · 2026
    Article
  2. Article
  3. The Complete Mitochondrial Genome of the Deep-Dwelling GobyInternational journal of molecular sciences · 2025
    Article
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  15. Rational Design of Aptamer-Tagged tRNAs.International journal of molecular sciences · 2020
    Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Bernhard KuhleThe Skaggs Institute for Chemical Biology, Scripps Research, La Jolla, CA, 92037, USA. bkuhle@scripps.edu.ORCID http://orcid.org/0000-0002-0501-1150
Joseph ChihadeDepartment of Chemistry, Carleton College, 1 North College St., Northfield, MN, 55057, USA.ORCID http://orcid.org/0000-0002-0143-0147
Paul SchimmelThe Skaggs Institute for Chemical Biology, Scripps Research, La Jolla, CA, 92037, USA. schimmel@scripps.edu.
Scripps Research Institute · USCarleton College · US

Funding

Stablization of Fragile Human Transfer RNAsR01GM125908 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI SCHIMMEL, PAUL R · 2018 to 2021
$1.5M
Unusual basis of tRNA identity in human mitochondriaR15GM071392 · NIGMS · CARLETON COLLEGE · PI CHIHADE, JOSEPH W · 2006 to 2007
$214k
NIGMS NIH HHS R01 GM125908NIGMS NIH HHS R15 GM071392
6 · The paper itself

Abstract

Metazoan complexity and life-style depend on the bioenergetic potential of mitochondria. However, higher aerobic activity and genetic drift impose strong mutation pressure and risk of irreversible fitness decline in mitochondrial (mt)DNA-encoded genes. Bilaterian mitochondria-encoded tRNA genes, key players in mitochondrial activity, have accumulated mutations at significantly higher rates than their cytoplasmic counterparts, resulting in foreshortened and fragile structures. Here we show that fragility of mt tRNAs coincided with the evolution of bilaterian animals. We demonstrate that bilaterians compensated for this reduced structural complexity in mt tRNAs by sequence-independent induced-fit adaption to the cognate mitochondrial aminoacyl-tRNA synthetase (aaRS). Structural readout by nuclear-encoded aaRS partners relaxed the sequence constraints on mt tRNAs and facilitated accommodation of functionally disruptive mutational insults by cis-acting epistatic compensations. Our results thus suggest that mutational freedom in mt tRNA genes is an adaptation to increased mutation pressure that was associated with the evolution of animal complexity.

Indexed as

MutationAdaptation, PhysiologicalAmino Acyl-tRNA SynthetasesAnimalsBase SequenceCell NucleusEpistasis, GeneticEvolution, MolecularMitochondriaModels, GeneticModels, MolecularNucleic Acid ConformationProtein ConformationRNA, MitochondrialRNA StabilityRNA, TransferAmino Acyl-tRNA SynthetasesRNA, MitochondrialRNA, Transfer

Identifiers

PMID32080176
PMCPMC7033119
OpenAlexW3008276998

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.