Evidence map›Paper›PMID 32078764›Full record

ArticleACS infectious diseases2020

Probing the Open Global Health Chemical Diversity Library for Multistage-Active Starting Points for Next-Generation Antimalarials.

Matthew Abraham, Kerstin Gagaring, Marisa L Martino, Manu Vanaerschot, David M Plouffe, Jaeson Calla, Karla P Godinez-Macias, Alan Y Du, Melanie Wree, Yevgeniya Antonova-Koch and 6 more

Open access · hybridAbstract read
In one paragraph

Article in ACS infectious diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 39 citations in OpenAlex.

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  11. Antimalarial drug discovery: progress and approaches.Nature reviews. Drug discovery · 2023
    Review
  12. 7-ACS infectious diseases · 2023
    Article
  13. Review
  14. Article
  15. Article
  16. Streamlined and Robust Stage-Specific Profiling of Gametocytocidal Compounds AgainstFrontiers in cellular and infection microbiology · 2022
    Article
  17. Review
  18. Article
  19. Review
  20. MalDA, Accelerating Malaria Drug Discovery.Trends in parasitology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 1 country.

Matthew AbrahamSchool of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, California 92093, United States.
Kerstin GagaringCalibr, The Scripps Research Institute, La Jolla, California 92037, United States.
Marisa L MartinoSchool of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, California 92093, United States.
Manu VanaerschotDepartment of Microbiology and Immunology, Columbia University Irving Medical Center, New York, New York 10032, United States.
David M PlouffeGenomics Institute of the Novartis Research Foundation, 10675 John Jay Hopkins Drive, San Diego, California 92121, United States.
Jaeson CallaSchool of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, California 92093, United States.
Karla P Godinez-MaciasSchool of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, California 92093, United States.
Alan Y DuSchool of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, California 92093, United States.
Melanie WreeSchool of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, California 92093, United States.
Yevgeniya Antonova-KochSchool of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, California 92093, United States.
Korina EribezSchool of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, California 92093, United States.
Madeline R LuthSchool of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, California 92093, United States.
Sabine OttilieSchool of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, California 92093, United States.
David A FidockDepartment of Microbiology and Immunology, Columbia University Irving Medical Center, New York, New York 10032, United States.
Case W McNamaraCalibr, The Scripps Research Institute, La Jolla, California 92037, United States.ORCID 0000-0002-5754-3407
Elizabeth A WinzelerSchool of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, California 92093, United States.ORCID 0000-0002-4049-2113
University of California San Diego · USColumbia University Irving Medical Center · USScripps Research Institute · USGenomics Institute of the Novartis Research Foundation · US

Funding

University of California Launching Future Leaders in Global Health Research Training ProgramD43TW009343 · FIC · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CRAIG R COHEN, Sung-Jae Lee · 2017 to 2026
$14.7M
Training Program in Basic Clinical GeneticsT32GM008666 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 1998 to 2021
$8.6M
Discovery of chemically validated malaria liver stage targetsR01AI090141 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WINZELER, ELIZABETH A · 2011 to 2019
$3.4M
UC San Diego Genetics Training ProgramT32GM145427 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BRUCE A HAMILTON · 2022 to 2026
$2.6M
Defining the targets of broad intervention antimalarial agentsR01AI103058 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WINZELER, ELIZABETH A · 2013 to 2016
$2.6M
FIC NIH HHS D43 TW009343NIAID NIH HHS R01 AI090141NIAID NIH HHS R01 AI103058NIGMS NIH HHS T32 GM008666NIGMS NIH HHS T32 GM145427
6 · The paper itself

Abstract

Most phenotypic screens aiming to discover new antimalarial chemotypes begin with low cost, high-throughput tests against the asexual blood stage (ABS) of the malaria parasite life cycle. Compounds active against the ABS are then sequentially tested in more difficult assays that predict whether a compound has other beneficial attributes. Although applying this strategy to new chemical libraries may yield new leads, repeated iterations may lead to diminishing returns and the rediscovery of chemotypes hitting well-known targets. Here, we adopted a different strategy to find starting points, testing ∼70,000 open source small molecules from the Global Health Chemical Diversity Library for activity against the liver stage, mature sexual stage, and asexual blood stage malaria parasites in parallel. In addition, instead of using an asexual assay that measures accumulated parasite DNA in the presence of compound (SYBR green), a real time luciferase-dependent parasite viability assay was used that distinguishes slow-acting (delayed death) from fast-acting compounds. Among 382 scaffolds with the activity confirmed by dose response (<10 μM), we discovered 68 novel delayed-death, 84 liver stage, and 68 stage V gametocyte inhibitors as well. Although 89% of the evaluated compounds had activity in only a single life cycle stage, we discovered six potent (half-maximal inhibitory concentration of <1 μM) multistage scaffolds, including a novel cytochrome bc1 chemotype. Our data further show the luciferase-based assays have higher sensitivity. Chemoinformatic analysis of positive and negative compounds identified scaffold families with a strong enrichment for activity against specific or multiple stages.

Indexed as

Drug DiscoveryAntimalarialsCheminformaticsDrug Evaluation, PreclinicalHigh-Throughput Screening AssaysLife Cycle StagesPlasmodium falciparumSmall Molecule LibrariesAntimalarialsSmall Molecule Librarieschemoinformatic analysisdrug discoverymalariamultistage antimalarialswhole genome sequencing (WGS)

Identifiers

PMID32078764
PMCPMC7155171
OpenAlexW3008444660

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.