Evidence map›Paper›PMID 32076643›Full record

ArticleScience advances2020

Control of matrix stiffness promotes endodermal lineage specification by regulating SMAD2/3 via lncRNA LINC00458.

Yu-Fan Chen, Yi-Shuan J Li, Chih-Hung Chou, Men Yee Chiew, Hsien-Da Huang, Jennifer Hui-Chun Ho, Shu Chien, Oscar K Lee

Abstract read
In one paragraph

Article in Science advances, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

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  20. Defined Microenvironments Trigger In Vitro Gastrulation in Human Pluripotent Stem Cells.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yu-Fan ChenInstitute of Clinical Medicine, National Yang-Ming University, Taipei, Taiwan.ORCID 0000-0002-1661-298X
Yi-Shuan J LiInstitute of Engineering in Medicine, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0002-8162-8988
Chih-Hung ChouDepartment of Biological Science and Technology, National Chiao Tung University, Hsinchu, Taiwan.ORCID 0000-0001-5714-1718
Men Yee ChiewDepartment of Biological Science and Technology, National Chiao Tung University, Hsinchu, Taiwan.
Hsien-Da HuangSchool of Life and Health Sciences, Warshel Institute for Computational Biology, The Chinese University of Hong Kong, Shenzhen, Guangdong, China.
Jennifer Hui-Chun HoInstitute of Clinical Medicine, National Yang-Ming University, Taipei, Taiwan.ORCID 0000-0003-0884-0859
Shu ChienInstitute of Engineering in Medicine, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0003-0332-285X
Oscar K LeeInstitute of Clinical Medicine, National Yang-Ming University, Taipei, Taiwan.ORCID 0000-0001-5232-5374

Funding

Systems Biology Analyses for Hemodynamic Regulation of Vascular HomeostasisR01HL108735 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHIEN, SHU, SHYY, JOHN YJ · 2012 to 2024
$13.4M
Shear Regulation of MicroRNA Transportomes and Targetomes in Vascular HomeostasisR01HL106579 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHIEN, SHU, SHYY, JOHN YJ · 2011 to 2022
$8.3M
Role of Spatiotemporal Epigenetic Dynamics in Regulating Endothelial Gene Expressions under FlowsR01HL121365 · NHLBI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHIEN, SHU, WANG, YINGXIAO · 2014 to 2025
$7.5M
Locus-specific Imaging of Dynamic Histone Methylations during ReprogrammingR01GM125379 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHIEN, SHU, WANG, YINGXIAO · 2017 to 2020
$2.4M
NHLBI NIH HHS R01 HL106579NHLBI NIH HHS R01 HL108735NHLBI NIH HHS R01 HL121365NIGMS NIH HHS R01 GM125379
6 · The paper itself

Abstract

During endoderm formation, cell identity and tissue morphogenesis are tightly controlled by cell-intrinsic and cell-extrinsic factors such as biochemical and physical inputs. While the effects of biochemical factors are well studied, the physical cues that regulate cell division and differentiation are poorly understood. RNA sequencing analysis demonstrated increases of endoderm-specific gene expression in hPSCs cultured on soft substrate (Young's modulus, 3 ± 0.45 kPa) in comparison with hard substrate (Young's modulus, 165 ± 6.39 kPa). Further analyses revealed that multiple long noncoding RNAs (lncRNAs) were up-regulated on soft substrate; among them,

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsCell DifferentiationCell LineCell LineageCells, CulturedEndodermExtracellular MatrixGene Expression ProfilingGene Knockdown TechniquesHumansMiceModels, BiologicalOrgan SpecificityRNA InterferenceRNA, Long NoncodingCAHM long non-coding RNA, humanRNA, Long NoncodingSmad2 ProteinSMAD2 protein, humanSmad3 ProteinSMAD3 protein, human

Identifiers

PMID32076643
PMCPMC7002135

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.