Evidence map›Paper›PMID 32072248›Full record

ReviewMedical microbiology and immunology2020

Structural proteomics, electron cryo-microscopy and structural modeling approaches in bacteria-human protein interactions.

Sounak Chowdhury, Lotta Happonen, Hamed Khakzad, Lars Malmström, Johan Malmström

Open access · hybridAbstract readReview
In one paragraph

Review in Medical microbiology and immunology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

  1. Rapid Proteome-Wide Discovery of Protein-Protein Interactions With ppIRIS.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Frontiers in genetics · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Sounak ChowdhuryDivision of Infection Medicine, Department of Clinical Sciences, Faculty of Medicine, Lund University, 22184, Lund, Sweden.
Lotta HapponenDivision of Infection Medicine, Department of Clinical Sciences, Faculty of Medicine, Lund University, 22184, Lund, Sweden.
Hamed KhakzadInstitute for Computational Science, University of Zurich, 8057, Zurich, Switzerland.
Lars MalmströmDivision of Infection Medicine, Department of Clinical Sciences, Faculty of Medicine, Lund University, 22184, Lund, Sweden.
Johan MalmströmDivision of Infection Medicine, Department of Clinical Sciences, Faculty of Medicine, Lund University, 22184, Lund, Sweden. johan.malmstrom@med.lu.se.ORCID http://orcid.org/0000-0002-2889-7169
Lund University · SESIB Swiss Institute of Bioinformatics · CH

Funding

H2020 Marie Skłodowska-Curie Actions 765042
6 · The paper itself

Abstract

A central challenge in infection medicine is to determine the structure and function of host-pathogen protein-protein interactions to understand how these interactions facilitate bacterial adhesion, dissemination and survival. In this review, we focus on proteomics, electron cryo-microscopy and structural modeling to showcase instances where affinity-purification (AP) and cross-linking (XL) mass spectrometry (MS) has advanced our understanding of host-pathogen interactions. We highlight cases where XL-MS in combination with structural modeling has provided insight into the quaternary structure of interspecies protein complexes. We further exemplify how electron cryo-tomography has been used to visualize bacterial-human interactions during attachment and infection. Lastly, we discuss how AP-MS, XL-MS and electron cryo-microscopy and -tomography together with structural modeling approaches can be used in future studies to broaden our knowledge regarding the function, dynamics and evolution of such interactions. This knowledge will be of relevance for future drug and vaccine development programs.

Indexed as

Host Microbial InteractionsModels, MolecularProtein Interaction MappingProteomicsBacterial ProteinsCryoelectron MicroscopyHumansMass SpectrometryProtein Interaction MapsProtein Structure, QuaternaryBacterial ProteinsAffinity-purification mass spectrometryCross-linking mass spectrometryElectron cryo-microscopyHost–pathogen interactionMolecular modelingProteomics

Identifiers

PMID32072248
PMCPMC7223518
OpenAlexW3008586858

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.