Evidence map›Paper›PMID 32072165›Full record

ArticleClinical infectious diseases : an official publication of the Infectious Diseases Society of America2020

Qualification and Clinical Validation of an Immunodiagnostic Assay for Detecting 11 Additional Streptococcus pneumoniae Serotype-specific Polysaccharides in Human Urine.

Warren V Kalina, Victor Souza, Kangjian Wu, Peter Giardina, Andrew McKeen, Qin Jiang, Charles Tan, Roger French, Yanhua Ren, Kelly Belanger and 8 more

Open access · greenAbstract read
In one paragraph

Article in Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 1 pooled it
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 1 synthesis or guideline pooled it, 52 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 1 institution in 1 country.

Warren V KalinaVaccine Research and Development,Pfizer Research, Pearl River, New York, USA.
Victor SouzaVaccine Research and Development,Pfizer Research, Pearl River, New York, USA.
Kangjian WuVaccine Research and Development,Pfizer Research, Pearl River, New York, USA.
Peter GiardinaVaccine Research and Development,Pfizer Research, Pearl River, New York, USA.
Andrew McKeenEarly Clinical Development, Pfizer Research, Pearl River, New York, USA.
Qin JiangGlobal Clinical Affairs, Pfizer, Collegeville, Pennsylvania, USA.
Charles TanEarly Clinical Development, Pfizer Research, Pearl River, New York, USA.
Roger FrenchEarly Clinical Development, Pfizer Research, Pearl River, New York, USA.
Yanhua RenVaccine Research and Development,Pfizer Research, Pearl River, New York, USA.
Kelly BelangerVaccine Research and Development,Pfizer Research, Pearl River, New York, USA.
Susan McElhineyVaccine Research and Development,Pfizer Research, Pearl River, New York, USA.
Manu UnnithanVaccine Research and Development,Pfizer Research, Pearl River, New York, USA.
Huiming ChengVaccine Research and Development,Pfizer Research, Pearl River, New York, USA.
Terri MininniVaccine Research and Development,Pfizer Research, Pearl River, New York, USA.
Donna Giordano-SchmidtVaccine Research and Development,Pfizer Research, Pearl River, New York, USA.
Bradford D GessnerMedical and Scientific Affairs, Pfizer, Collegeville, Pennsylvania, USA.
Kathrin U JansenVaccine Research and Development,Pfizer Research, Pearl River, New York, USA.
Michael W PrideVaccine Research and Development,Pfizer Research, Pearl River, New York, USA.
Pfizer (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIdentifying Streptococcus pneumoniae serotypes by urinary antigen detection (UAD) assay is the most sensitive way to evaluate the epidemiology of nonbacteremic community-acquired pneumonia (CAP). We first described a UAD assay to detect the S. pneumoniae serotypes 1, 3, 4, 5, 6A, 6B, 7F, 9V, 14, 18C, 19A, 19F, and 23F, covered by the licensed 13-valent S. pneumoniae conjugate vaccine. To assess the substantial remaining pneumococcal disease burden after introduction of several pneumococcal vaccines, a UAD-2 assay was developed to detect 11 additional serotypes (2, 8, 9N, 10A, 11A, 12F, 15B, 17F, 20, 22F, and 33F) in individuals with radiographically confirmed CAP.

methodsThe specificity of the UAD-2 assay was achieved by capturing pneumococcal polysaccharides with serotype-specific monoclonal antibodies, using Luminex technology. Assay qualification was used to assess accuracy, precision, and sample linearity. Serotype positivity was based on cutoffs determined by nonparametric statistical evaluation of urine samples from individuals without pneumococcal disease. The sensitivity and specificity of the positivity cutoffs were assessed in a clinical validation, using urine samples obtained from a large study that measured the proportion of radiographically confirmed CAP caused by S. pneumoniae serotypes in hospitalized US adults.

resultsThe UAD-2 assay was shown to be specific and reproducible. Clinical validation demonstrated assay sensitivity and specificity of 92.2% and 95.9% against a reference standard of bacteremic pneumonia. In addition, the UAD-2 assay identified a S. pneumoniae serotype in 3.72% of nonbacteremic CAP cases obtained from hospitalized US adults. When combined with bacteremic CAP cases, the proportion of pneumonias with a UAD-2 serotype was 4.33%.

conclusionsThe qualified/clinically validated UAD-2 method has applicability in understanding the epidemiology of nonbacteremic S. pneumoniae CAP and for assessing the efficacy of future pneumococcal conjugate vaccines that are under development.

Indexed as

Pneumococcal InfectionsStreptococcus pneumoniaeAdultHumansPneumococcal VaccinesPolysaccharidesSerogroupSerotypingPneumococcal VaccinesPolysaccharidespolysaccharideStreptococcus pneumoniaUrine antigen detection

Identifiers

PMID32072165
PMCPMC7713672
OpenAlexW3006864433

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.