Evidence map›Paper›PMID 32071394›Full record

ArticleThe ISME journal2020

Polysaccharide niche partitioning of distinct Polaribacter clades during North Sea spring algal blooms.

Burak Avcı, Karen Krüger, Bernhard M Fuchs, Hanno Teeling, Rudolf I Amann

Open access · hybridAbstract read
In one paragraph

Article in The ISME journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
9.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 90 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Burak AvcıDepartment of Molecular Ecology, Max Planck Institute for Marine Microbiology, Celsiusstraße 1, 28359, Bremen, Germany.ORCID http://orcid.org/0000-0002-2358-7671
Karen KrügerDepartment of Molecular Ecology, Max Planck Institute for Marine Microbiology, Celsiusstraße 1, 28359, Bremen, Germany.ORCID http://orcid.org/0000-0001-7579-8414
Bernhard M FuchsDepartment of Molecular Ecology, Max Planck Institute for Marine Microbiology, Celsiusstraße 1, 28359, Bremen, Germany.ORCID http://orcid.org/0000-0001-9828-1290
Hanno TeelingDepartment of Molecular Ecology, Max Planck Institute for Marine Microbiology, Celsiusstraße 1, 28359, Bremen, Germany. hteeling@mpi-bremen.de.
Rudolf I AmannDepartment of Molecular Ecology, Max Planck Institute for Marine Microbiology, Celsiusstraße 1, 28359, Bremen, Germany. ramann@mpi-bremen.de.ORCID http://orcid.org/0000-0002-0846-7372
Max Planck Institute for Marine Microbiology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Massive releases of organic substrates during marine algal blooms trigger growth of many clades of heterotrophic bacteria. Algal polysaccharides represent the most diverse and structurally complex class of these substrates, yet their role in shaping the microbial community composition is poorly understood. We investigated, whether polysaccharide utilization capabilities contribute to niche differentiation of Polaribacter spp. (class Flavobacteriia; known to include relevant polysaccharide-degraders) that were abundant during 2009-2012 spring algal blooms in the southern North Sea. We identified six distinct Polaribacter clades using phylogenetic and phylogenomic analyses, quantified their abundances via fluorescence in situ hybridization, compared metagenome-assembled genomes, and assessed in situ gene expression using metaproteomics. Four clades with distinct polysaccharide niches were dominating. Polaribacter 2-a comprised typical first responders featuring small genomes with limited polysaccharide utilization capacities. Polaribacter 3-a were abundant only in 2010 and possessed a distinct sulfated α-glucoronomannan degradation potential. Polaribacter 3-b responded late in blooms and had the capacity to utilize sulfated xylan. Polaribacter 1-a featured high numbers of glycan degradation genes and were particularly abundant following Chattonella algae blooms. These results support the hypothesis that sympatric Polaribacter clades occupy distinct glycan niches during North Sea spring algal blooms.

Indexed as

ChlorophytaEutrophicationFlavobacteriaceaeIn Situ Hybridization, FluorescenceMetagenomeNorth SeaPhylogenyPolysaccharidesSeasonsPolysaccharides

Identifiers

PMID32071394
PMCPMC7242417
OpenAlexW3007256287

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.