Evidence map›Paper›PMID 32071379›Full record

ArticleScientific reports2020

Genomic monitoring to understand the emergence and spread of Usutu virus in the Netherlands, 2016-2018.

B Bas Oude Munnink, E Münger, D F Nieuwenhuijse, R Kohl, A van der Linden, C M E Schapendonk, H van der Jeugd, M Kik, J M Rijks, C B E M Reusken and 1 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT05294003 (Prevalence of West Nile Virus and Usutu Virus Serum Antibodies in Dutch Bird Ringers), which is not on this map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05294003 completednot on this mapstarted 2021, after this paper: background citation

Prevalence of West Nile Virus and Usutu Virus Serum Antibodies in Dutch Bird Ringers

TypeobservationalSponsorLeiden University Medical CenterRan2021 to 2021Enrolled162ConditionsWest Nile Virus
3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 74 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Ixodes ricinus as potential vector for Usutu virus.PLoS neglected tropical diseases · 2024
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

B Bas Oude Munnink *ErasmusMC, Department of Viroscience, WHO collaborating centre for arbovirus and viral hemorrhagic fever Reference and Research, Rotterdam, the Netherlands. b.oudemunnink@erasmusmc.nl.
E Münger *ErasmusMC, Department of Viroscience, WHO collaborating centre for arbovirus and viral hemorrhagic fever Reference and Research, Rotterdam, the Netherlands.ORCID http://orcid.org/0000-0002-4428-8988
D F NieuwenhuijseErasmusMC, Department of Viroscience, WHO collaborating centre for arbovirus and viral hemorrhagic fever Reference and Research, Rotterdam, the Netherlands.ORCID http://orcid.org/0000-0003-1310-5031
R KohlErasmusMC, Department of Viroscience, WHO collaborating centre for arbovirus and viral hemorrhagic fever Reference and Research, Rotterdam, the Netherlands.
A van der LindenErasmusMC, Department of Viroscience, WHO collaborating centre for arbovirus and viral hemorrhagic fever Reference and Research, Rotterdam, the Netherlands.
C M E SchapendonkErasmusMC, Department of Viroscience, WHO collaborating centre for arbovirus and viral hemorrhagic fever Reference and Research, Rotterdam, the Netherlands.
H van der JeugdVogeltrekstation - Dutch Centre for Avian Migration and Demography, NIOO-KNAW, Wageningen, the Netherlands.
M KikDutch Wildlife Health Centre, University of Utrecht, Utrecht, the Netherlands.
J M RijksDutch Wildlife Health Centre, University of Utrecht, Utrecht, the Netherlands.
C B E M Reusken *ErasmusMC, Department of Viroscience, WHO collaborating centre for arbovirus and viral hemorrhagic fever Reference and Research, Rotterdam, the Netherlands.
M Koopmans *ErasmusMC, Department of Viroscience, WHO collaborating centre for arbovirus and viral hemorrhagic fever Reference and Research, Rotterdam, the Netherlands.
Erasmus MC · NLNetherlands Institute of Ecology · NLUtrecht University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Usutu virus (USUV) is a mosquito-borne flavivirus circulating in Western Europe that causes die-offs of mainly common blackbirds (Turdus merula). In the Netherlands, USUV was first detected in 2016, when it was identified as the likely cause of an outbreak in birds. In this study, dead blackbirds were collected, screened for the presence of USUV and submitted to Nanopore-based sequencing. Genomic sequences of 112 USUV were obtained and phylogenetic analysis showed that most viruses identified belonged to the USUV Africa 3 lineage, and molecular clock analysis evaluated their most recent common ancestor to 10 to 4 years before first detection of USUV in the Netherlands. USUV Europe 3 lineage, commonly found in Germany, was less frequently detected. This analyses further suggest some extent of circulation of USUV between the Netherlands, Germany and Belgium, as well as likely overwintering of USUV in the Netherlands.

Indexed as

AnimalsBird DiseasesDisease OutbreaksFlavivirusFlavivirus InfectionsNetherlandsSongbirds

Identifiers

PMID32071379
PMCPMC7029044
OpenAlexW3006703250

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.