Evidence map›Paper›PMID 32070411›Full record

ArticleGenome medicine2020

Comprehensive pharmacogenomic characterization of gastric cancer.

Jason K Sa, Jung Yong Hong, In-Kyoung Lee, Ju-Sun Kim, Moon-Hee Sim, Ha Jung Kim, Ji Yeong An, Tae Sung Sohn, Joon Ho Lee, Jae Moon Bae and 19 more

Open access · goldAbstract read
In one paragraph

Article in Genome medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 54 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 3 institutions in 1 country.

Jason K SaDepartment of Biomedical Sciences, Korea University College of Medicine, Seoul, Republic of Korea.ORCID 0000-0002-3251-5004
Jung Yong HongDivision of Hematology-Oncology, Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
In-Kyoung LeeDivision of Hematology-Oncology, Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Ju-Sun KimDivision of Hematology-Oncology, Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Moon-Hee SimDivision of Hematology-Oncology, Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Ha Jung KimDivision of Hematology-Oncology, Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Ji Yeong AnDepartment of Surgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Tae Sung SohnDepartment of Surgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Joon Ho LeeDepartment of Surgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Jae Moon BaeDepartment of Surgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Sung KimDepartment of Surgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Kyoung-Mee KimDepartment of Pathology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Seung Tae KimDivision of Hematology-Oncology, Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Se Hoon ParkDivision of Hematology-Oncology, Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Joon Oh ParkDivision of Hematology-Oncology, Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Ho Yeong LimDivision of Hematology-Oncology, Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Won Ki KangDivision of Hematology-Oncology, Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Nam-Gu HerInstitute for Refractory Cancer Research, Samsung Medical Center, Seoul, Republic of Korea.
Yeri LeeInstitute for Refractory Cancer Research, Samsung Medical Center, Seoul, Republic of Korea.
Hee Jin ChoInstitute for Refractory Cancer Research, Samsung Medical Center, Seoul, Republic of Korea.
Yong Jae ShinInstitute for Refractory Cancer Research, Samsung Medical Center, Seoul, Republic of Korea.
Misuk KimInstitute for Refractory Cancer Research, Samsung Medical Center, Seoul, Republic of Korea.
Harim KooInstitute for Refractory Cancer Research, Samsung Medical Center, Seoul, Republic of Korea.
Mirinae KimInstitute for Refractory Cancer Research, Samsung Medical Center, Seoul, Republic of Korea.
Yun Jee SeoInstitute for Refractory Cancer Research, Samsung Medical Center, Seoul, Republic of Korea.
Ja Yeon KimInstitute for Refractory Cancer Research, Samsung Medical Center, Seoul, Republic of Korea.
Min-Gew ChoiDepartment of Surgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea. mingew.choi@samsung.com.
Do-Hyun NamInstitute for Refractory Cancer Research, Samsung Medical Center, Seoul, Republic of Korea. nsnam@skku.edu.
Jeeyun LeeDivision of Hematology-Oncology, Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea. jyunlee@skku.edu.
Samsung Medical Center · KRSamsung (South Korea) · KRKorea University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGastric cancer is among the most lethal human malignancies. Previous studies have identified molecular aberrations that constitute dynamic biological networks and genomic complexities of gastric tumors. However, the clinical translation of molecular-guided targeted therapy is hampered by challenges. Notably, solid tumors often harbor multiple genetic alterations, complicating the development of effective treatments.

methodsTo address such challenges, we established a comprehensive dataset of molecularly annotated patient derivatives coupled with pharmacological profiles for 60 targeted agents to explore dynamic pharmacogenomic interactions in gastric cancers.

resultsWe identified lineage-specific drug sensitivities based on histopathological and molecular subclassification, including substantial sensitivities toward VEGFR and EGFR inhibition therapies in diffuse- and signet ring-type gastric tumors, respectively. We identified potential therapeutic opportunities for WNT pathway inhibitors in ALK-mutant tumors, a significant association between PIK3CA-E542K mutation and AZD5363 response, and transcriptome expression of RNF11 as a potential predictor of response to gefitinib.

conclusionsCollectively, our results demonstrate the feasibility of drug screening combined with tumor molecular characterization to facilitate personalized therapeutic regimens for gastric tumors.

Indexed as

Drug Resistance, NeoplasmPharmacogenomic VariantsAntineoplastic AgentsCell Line, TumorClass I Phosphatidylinositol 3-KinasesDNA-Binding ProteinsErbB ReceptorsGefitinibHumansMutationProtein Kinase InhibitorsPyrimidinesPyrrolesReceptors, Vascular Endothelial Growth FactorStomach NeoplasmsTranscriptomeAntineoplastic AgentscapivasertibClass I Phosphatidylinositol 3-KinasesDNA-Binding ProteinsEGFR protein, humanErbB ReceptorsGefitinibPIK3CA protein, humanProtein Kinase InhibitorsPyrimidinesPyrrolesReceptors, Vascular Endothelial Growth FactorRNF11 protein, humanGastric cancerGefitinibPharmacogenomicsPIK3CA-E542KRNF11

Identifiers

PMID32070411
PMCPMC7029441
OpenAlexW3011823531

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.