Evidence map›Paper›PMID 32067146›Full record

ArticleVirus genes2020

Inherited chromosomally integrated HHV-6 possibly modulates human gene expression.

Ryuichi Kumata, Jumpei Ito, Kei Sato

Abstract read
PubMed Publisher
In one paragraph

Article in Virus genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
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  3. Review
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ryuichi KumataDivision of Systems Virology, Department of Infectious Disease Control, International Research Center for Infectious Diseases, Institute of Medical Science, The University of Tokyo, Tokyo, 1088639, Japan.ORCID http://orcid.org/0000-0002-6428-6357
Jumpei ItoDivision of Systems Virology, Department of Infectious Disease Control, International Research Center for Infectious Diseases, Institute of Medical Science, The University of Tokyo, Tokyo, 1088639, Japan.ORCID http://orcid.org/0000-0003-0440-8321
Kei SatoDivision of Systems Virology, Department of Infectious Disease Control, International Research Center for Infectious Diseases, Institute of Medical Science, The University of Tokyo, Tokyo, 1088639, Japan. ksato@ims.u-tokyo.ac.jp.ORCID http://orcid.org/0000-0003-4431-1380
National Institute of Infectious Diseases · JP

Funding

Core Research for Evolutional Science and Technology AIP challenge programJapan Agency for Medical Research and Development J-PRIDE JP19fm0208006, Research Program on HIV/AIDS JP19fk0410014 and JP19fk0410019Japan Society for the Promotion of Science (JP) Research Fellow PD JP19J01713Japan Society for the Promotion of Science (JP) Scientific Research B JP18H02662, Scientific Research on Innovative Areas JP16H06429, JP16K21723, JP17H05813, and JP19H04826, Fund for the Promotion of Joint International Research (Fostering Joint International Research) JP18KK0447
6 · The paper itself

Abstract

Approximately, 1% of human population possesses a copy of human herpesvirus 6A and 6B (HHV-6A/B) in the genome. This viral element is referred to as inherited chromosomally integrated HHV-6A/B (iciHHV-6A/B) and is encoded in all of their cells. A recent study revealed that iciHHV-6A/B potentially increases the immune responses against HHV-6. However, it remains unclear whether iciHHV-6A/B affects human gene expression. Here, we perform global transcriptome analysis using the datasets obtained from various human tissues. We detected two and four individuals positive for iciHHV-6A and iciHHV-6B, respectively, and revealed that the transcriptional expression of iciHHV-6A/B was sporadic in the human body. Transcriptome analysis identified the human genes differentially expressed between iciHHV-6A/B-positive and -negative individuals. Particularly, the expression of some genes encoding immunoglobulins decreased in sigmoid colon of iciHHV-6A/B-positive individuals. Our findings suggest that iciHHV-6A/B may be associated with human health maintenance.

Indexed as

Gene Expression RegulationVirus IntegrationGene Expression ProfilingGene Expression Regulation, ViralHerpesvirus 6, HumanHost-Pathogen InteractionsHumansRoseolovirus InfectionsTranscriptomeGTExHHV-6Human herpesvirus 6iciHHV-6Transcriptome

Identifiers

PMID32067146
OpenAlexW3007261534

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.