Evidence map›Paper›PMID 32066974›Full record

ArticleNature medicine2020

An immune-cell signature of bacterial sepsis.

Miguel Reyes, Michael R Filbin, Roby P Bhattacharyya, Kianna Billman, Thomas Eisenhaure, Deborah T Hung, Bruce D Levy, Rebecca M Baron, Paul C Blainey, Marcia B Goldberg and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 317 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
317citing papers in PubMed, 3 pooled it
40.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

317 citing papers in PubMed, 3 syntheses or guidelines pooled it, 486 citations in OpenAlex.

  1. Pooled it
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  19. [Analyzing research advances in single-cell sequencing technology for immunopathological mechanisms in acute-on-chronic liver failure].Zhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology · 2026
    Review
  20. Article

257 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Miguel Reyes *Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Michael R Filbin *Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Roby P BhattacharyyaBroad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-6955-5088
Kianna BillmanBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Thomas EisenhaureBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Deborah T HungBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Bruce D LevyDivision of Pulmonary and Critical Care Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, USA.
Rebecca M BaronDivision of Pulmonary and Critical Care Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, USA.
Paul C BlaineyBroad Institute of MIT and Harvard, Cambridge, MA, USA. pblainey@broadinstitute.org.ORCID http://orcid.org/0000-0002-4889-8783
Marcia B GoldbergBroad Institute of MIT and Harvard, Cambridge, MA, USA. marcia.goldberg@mgh.harvard.edu.ORCID http://orcid.org/0000-0003-4266-9733
Nir HacohenBroad Institute of MIT and Harvard, Cambridge, MA, USA. nhacohen@broadinstitute.org.ORCID http://orcid.org/0000-0002-2349-2656
Broad Institute · USBrigham and Women's Hospital · US

Funding

Center for Cell CircuitsP50HG006193 · NHGRI · BROAD INSTITUTE, INC. · PI REGEV, AVIV · 2011 to 2015
$15.6M
Center for Cell CircuitsRM1HG006193 · NHGRI · BROAD INSTITUTE, INC. · PI BLAINEY, PAUL CLARK, HACOHEN, NIR · 2016 to 2020
$14.9M
Therapeutic modulation of zinc for lung injury and mechanobiologyR01HL142093 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI BARON, REBECCA M, TSCHUMPERLIN, DANIEL J. · 2019 to 2022
$2.8M
The Immune Cell Atlas – A Robust Framework to Map the Entire Human Immune SystemR56AI137244 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BENOIST, CHRISTOPHE O., HACOHEN, NIR · 2018 to 2018
$2.0M
Low-input multiplex isolation and profiling of human immune cell subsets using an integrated microfluidics deviceU24AI118668 · NIAID · BROAD INSTITUTE, INC. · PI HACOHEN, NIR · 2015 to 2019
$2.0M
Monitoring peripheral blood leukocyte and immune responses in health and diseaseU24AI118656 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI LEVY, BRUCE D, VOLDMAN, JOEL · 2015 to 2019
$1.9M
Bioinformatic and functional analysis of antibiotic-responsive small non-coding RNAs in bacterial pathogensK08AI119157 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI BHATTACHARYYA, ROBY PAUL · 2015 to 2018
$758k
NHGRI NIH HHS P50 HG006193NHGRI NIH HHS RM1 HG006193NHLBI NIH HHS R01 HL142093NIAID NIH HHS K08 AI119157NIAID NIH HHS R56 AI137244NIAID NIH HHS U24 AI118656NIAID NIH HHS U24 AI118668U.S. Department of Health & Human Services | Biomedical Advanced Research and Development Authority (BARDA) 1DSEP160030-01-00U.S. Department of Health & Human Services | National Institutes of Health (NIH) 1K08AI119157-04U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) U24AI118668
6 · The paper itself

Abstract

Dysregulation of the immune response to bacterial infection can lead to sepsis, a condition with high mortality. Multiple whole-blood gene-expression studies have defined sepsis-associated molecular signatures, but have not resolved changes in transcriptional states of specific cell types. Here, we used single-cell RNA-sequencing to profile the blood of people with sepsis (n = 29) across three clinical cohorts with corresponding controls (n = 36). We profiled total peripheral blood mononuclear cells (PBMCs, 106,545 cells) and dendritic cells (19,806 cells) across all subjects and, on the basis of clustering of their gene-expression profiles, defined 16 immune-cell states. We identified a unique CD14

Indexed as

BacteriaBiomarkersBone Marrow CellsCohort StudiesEpigenesis, GeneticGene Expression ProfilingHumansMonocytesReproducibility of ResultsROC CurveSepsisSequence Analysis, RNATranscription, GeneticBiomarkers

Identifiers

PMID32066974
PMCPMC7235950
OpenAlexW3006033724

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.