Evidence map›Paper›PMID 32066947›Full record

ArticleNature immunology2020

HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.

Yetao Wang, Lawrence Lifshitz, Kyle Gellatly, Carol L Vinton, Kathleen Busman-Sahay, Sean McCauley, Pranitha Vangala, Kyusik Kim, Alan Derr, Smita Jaiswal and 11 more

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Nature immunology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT05243381 (Inflammation, NK Cells, Antisense Protein and Exosomes, and Correlation With Immune Response During HIV Infection), which is not on this map. Cited by 63 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed, 1 pooled it
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05243381 naunknown statusnot on this mapstarted 2022, after this paper: background citation

Inflammation, NK Cells, Antisense Protein and Exosomes, and Correlation With Immune Response During HIV Infection

TypeinterventionalSponsorUniversity Hospital, MontpellierRan2022 to 2024Enrolled60ConditionsHIV InfectionsArms20 ml blood test
3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 1 synthesis or guideline pooled it, 93 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Review
  15. Review
  16. Review
  17. IFIH1 (MDA5) is required for innate immune detection of intron-containing RNA expressed from the HIV-1 provirus.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  18. Review
  19. Review
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 4 institutions in 1 country.

Yetao WangProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA.
Lawrence LifshitzProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA.
Kyle GellatlyProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA.ORCID http://orcid.org/0000-0003-3500-2025
Carol L VintonBarrier Immunity Section, Laboratory of Viral Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Kathleen Busman-SahayVaccine and Gene Therapy Institute and Oregon National Primate Research Center, Oregon Health and Science University, Beaverton, OR, USA.ORCID http://orcid.org/0000-0002-8549-0023
Sean McCauleyProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA.
Pranitha VangalaProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA.
Kyusik KimProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA.ORCID http://orcid.org/0000-0001-9217-673X
Alan DerrProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA.
Smita JaiswalProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA.
Alper KucukuralProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA.ORCID http://orcid.org/0000-0001-9983-394X
Patrick McDonelProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA.
Peter W HuntDepartment of Medicine, University of California, San Francisco, CA, USA.
Thomas GreenoughProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA.
JeanMarie HoughtonDepartment of Medicine, University of Massachusetts Medical School, Worcester, MA, USA.
Ma SomsoukDepartment of Medicine, University of California, San Francisco, CA, USA.
Jacob D EstesVaccine and Gene Therapy Institute and Oregon National Primate Research Center, Oregon Health and Science University, Beaverton, OR, USA.
Jason M BrenchleyBarrier Immunity Section, Laboratory of Viral Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Manuel GarberProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA.ORCID http://orcid.org/0000-0001-8732-1293
Steven G DeeksDepartment of Medicine, University of California, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-6371-747X
Jeremy LubanProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA. jeremy.luban@umassmed.edu.ORCID http://orcid.org/0000-0001-5650-4054
University of Massachusetts Chan Medical School · USUniversity of California, San Francisco · USNational Institutes of Health · USOregon National Primate Research Center · US

Funding

Upgrade of confocal microscopy at the Oregon National Primate Research CenterP51OD011092 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI Bonnie J. Nagel · 2012 to 2026
$203.9M
Unsolicited R24 for the CFAR-Network of Integrated Clinical Sciences, CNICSR24AI067039 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Michael S. Saag · 2006 to 2026
$99.4M
Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Monica Gandhi · 1988 to 2026
$93.6M
University of Massachusetts Center for Clinical Science and Translational SupplementUL1TR001453 · NCATS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LUZURIAGA, KATHERINE F · 2015 to 2024
$39.0M
Viral reservoirs and sanctuaries in HAART - treated patients: role and mechanismsU19AI096109 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SCHACKER, TIMOTHY W · 2011 to 2015
$29.5M
Mechanisms of Immune Activation and Disease Progression in Animal ModelsZIAAI001029 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI BRENCHLEY, JASON · 2009 to 2025
$28.2M
UMASS MEDICAL CENTER FOR AIDS RESEARCHP30AI042845 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LUZURIAGA, KATHERINE F · 1998 to 2012
$13.0M
The HUSH complex in HIV-1 latencyR37AI147868 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI JEREMY LUBAN · 2019 to 2026
$6.4M
Rules of gene expression modeled on human dendritic cell response to pathogensU01HG007910 · NHGRI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GARBER, MANUEL, LUBAN, JEREMY · 2015 to 2017
$6.1M
Human Genes that Influence HIV-1 Replication, Pathogenesis, and Immunity in IVDUsDP1DA034990 · NIDA · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LUBAN, JEREMY · 2012 to 2016
$4.1M
Boosting cell-intrinsic innate immune recognition of HIV-1 by dendritic cellsR01AI111809 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LUBAN, JEREMY · 2014 to 2017
$2.4M
Stage-specific Beta Cell Response and Biomarker Profile During Virus-induced T1DR01DK105837 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GREINER, DALE LESLIE, HARLAN, DAVID MARSHALL · 2016 to 2019
$1.5M
NCATS NIH HHS UL1 TR001453NHGRI NIH HHS U01 HG007910NIAID NIH HHS P30 AI027763NIAID NIH HHS P30 AI042845NIAID NIH HHS R01 AI111809NIAID NIH HHS R21 AI119885NIAID NIH HHS R24 AI067039NIAID NIH HHS R37 AI147868NIAID NIH HHS U19 AI096109NIDA NIH HHS DP1 DA034990NIDDK NIH HHS R01 DK105837NIH HHS P51 OD011092NIH HHS S10 OD025002
6 · The paper itself

Abstract

Human immunodeficiency virus 1 (HIV-1) infection is associated with heightened inflammation and excess risk of cardiovascular disease, cancer and other complications. These pathologies persist despite antiretroviral therapy. In two independent cohorts, we found that innate lymphoid cells (ILCs) were depleted in the blood and gut of people with HIV-1, even with effective antiretroviral therapy. ILC depletion was associated with neutrophil infiltration of the gut lamina propria, type 1 interferon activation, increased microbial translocation and natural killer (NK) cell skewing towards an inflammatory state, with chromatin structure and phenotype typical of WNT transcription factor TCF7-dependent memory T cells. Cytokines that are elevated during acute HIV-1 infection reproduced the ILC and NK cell abnormalities ex vivo. These results show that inflammatory cytokines associated with HIV-1 infection irreversibly disrupt ILCs. This results in loss of gut epithelial integrity, microbial translocation and memory NK cells with heightened inflammatory potential, and explains the chronic inflammation in people with HIV-1.

Indexed as

Immunity, InnateCytokinesGene Expression RegulationHIV-1HIV InfectionsHomeostasisHumansImmunologic MemoryInflammationIn Vitro TechniquesKiller Cells, NaturalLymphocytesT Cell Transcription Factor 1Wnt Signaling PathwayCytokinesT Cell Transcription Factor 1TCF7 protein, human

Identifiers

PMID32066947
PMCPMC7044076
OpenAlexW3006198701

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.