Evidence map›Paper›PMID 32066491›Full record

ArticleParasites & vectors2020

The complete mitochondrial genome of a parasite at the animal-fungal boundary.

Salma Sana, Emilie A Hardouin, Richard Paley, Tiantian Zhang, Demetra Andreou

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Salma SanaDepartment of Life and Environmental Sciences, Faculty of Science and Technology, Bournemouth University, Talbot Campus, Poole, BH12 5BB, UK. salma.sana@uni-goettingen.de.
Emilie A HardouinDepartment of Life and Environmental Sciences, Faculty of Science and Technology, Bournemouth University, Talbot Campus, Poole, BH12 5BB, UK.
Richard PaleyCentre for Environment Fisheries and Aquaculture Science, Barrack Road, Weymouth, DT4 8UB, UK.
Tiantian ZhangDepartment of Life and Environmental Sciences, Faculty of Science and Technology, Bournemouth University, Talbot Campus, Poole, BH12 5BB, UK.
Demetra AndreouDepartment of Life and Environmental Sciences, Faculty of Science and Technology, Bournemouth University, Talbot Campus, Poole, BH12 5BB, UK. dandreou@bournemouth.ac.uk.ORCID http://orcid.org/0000-0001-9242-4692
Bournemouth University · GBCentre for Environment, Fisheries and Aquaculture Science · GBUniversity of Göttingen · DE

Funding

Bournemouth University (GB) Fusion Fund
6 · The paper itself

Abstract

backgroundSphaerothecum destruens is an obligate intracellular fish parasite which has been identified as a serious threat to freshwater fishes. Taxonomically, S. destruens belongs to the order Dermocystida within the class Ichthyosporea (formerly referred to as Mesomycetozoea), which sits at the animal-fungal boundary. Mitochondrial DNA (mtDNA) sequences can be valuable genetic markers for species detection and are increasingly used in environmental DNA (eDNA) based species detection. Furthermore, mtDNA sequences can be used in epidemiological studies by informing detection, strain identification and geographical spread.

methodsWe amplified the entire mitochondrial (mt) genome of S. destruens in two overlapping long fragments using primers designed based on the cox1, cob and nad5 partial sequences. The mt-genome architecture of S. destruens was then compared to close relatives to gain insights into its evolution.

resultsThe complete mt-genome of Sphaerothecum destruens is 23,939 bp in length and consists of 47 genes including 21 protein-coding genes, 2 rRNA, 22 tRNA and two unidentified open reading frames. The mitochondrial genome of S. destruens is intronless and compact with a few intergenic regions and includes genes that are often missing from animal and fungal mt-genomes, such as, the four ribosomal proteins (small subunit rps13 and 14; large subunit rpl2 and 16), tatC (twin-arginine translocase component C), and ccmC and ccmF (cytochrome c maturation protein ccmC and heme lyase).

conclusionsWe present the first mt-genome of S. destruens which also represents the first mt-genome for the order Dermocystida. The availability of the mt-genome can assist the detection of S. destruens and closely related parasites in eukaryotic diversity surveys using eDNA and assist epidemiological studies by improving molecular detection and tracking the parasite's spread. Furthermore, as the only representative of the order Dermocystida, its mt-genome can be used in the study of mitochondrial evolution of the unicellular relatives of animals.

Indexed as

Genome, MitochondrialAnimalsDNA PrimersFish DiseasesFishesGenetic MarkersMesomycetozoeaPhylogenyDNA PrimersGenetic MarkersAnimal-fungal boundaryDermocystidaInvasiveMesomycetozoeaMitochondrial DNAParasitePseudorasbora parvaSphaerothecum destruensTopmouth gudgeon

Identifiers

PMID32066491
PMCPMC7027106
OpenAlexW3006572670

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.