Evidence map›Paper›PMID 32066085›Full record

ReviewCurrent opinion in structural biology2020

Development of imaging scaffolds for cryo-electron microscopy.

Todd O Yeates, Matthew P Agdanowski, Yuxi Liu

Abstract readReview
In one paragraph

Review in Current opinion in structural biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. X-ray crystal structure of a designed rigidified imaging scaffold in the ligand-free conformation.Acta crystallographica. Section F, Structural biology communications · 2024
    Article
  10. Cryo-electron microscopy-based drug design.Frontiers in molecular biosciences · 2024
    Review
  11. Cryo-EM structure determination of small therapeutic protein targets at 3 Å-resolution using a rigid imaging scaffold.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. Design, synthesis, and characterization of protein origami based on self-assembly of a brick and staple artificial protein pair.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Review
  14. Cryo-EM for Small Molecules.Current protocols · 2022
    Review
  15. Article
  16. Review
  17. Protein Assembly by Design.Chemical reviews · 2021
    Review
  18. Article
  19. Developments and Ongoing Challenges for Analysis of Surface-Bound Proteins.Annual review of analytical chemistry (Palo Alto, Calif.) · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Todd O YeatesUCLA Department of Chemistry and Biochemistry, United States; UCLA-DOE Institute for Genomics and Proteomics, United States; UCLA Molecular Biology Institute, United States. Electronic address: yeates@mbi.ucla.edu.
Matthew P AgdanowskiUCLA Department of Chemistry and Biochemistry, United States.
Yuxi LiuUCLA Department of Chemistry and Biochemistry, United States; UCLA Molecular Biology Institute, United States.

Funding

Designing Novel Protein Assemblies as Rigid Symmetric Scaffolds for Cryo-EM ImagingR01GM129854 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI YEATES, TODD O · 2019 to 2022
$1.2M
NIGMS NIH HHS R01 GM129854
6 · The paper itself

Abstract

Following recent hardware and software developments, single particle cryo-electron microscopy (cryo-EM) has become one of the most popular structural biology tools. Many targets, such as viruses, large protein complexes and oligomeric membrane proteins, have been resolved to atomic resolution using single-particle cryo-EM, which relies on the accurate assignment of particle location and orientation from intrinsically noisy projection images. The same image processing procedures are more challenging for smaller proteins due to their lower signal-to-noise ratios. Consequently, though most cellular proteins are less than 50kDa, so far it has been possible to solve cryo-EM structures near that size range for only a few favorable cases. Here we highlight some of the challenges and recent efforts to break through this lower size limit by engineering large scaffolds to rigidly display multiple small proteins for imaging. Future design efforts are noted.

Indexed as

Cryoelectron MicroscopyMolecular WeightProteinsProteins

Identifiers

PMID32066085
PMCPMC7117969

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.