ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2020
Identification of genome-wide single-nucleotide polymorphisms among geographically diverse radish accessions.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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10 citing papers in PubMed.
- Co-identification of candidate regions associated with ovule number per ovary through QTL analysis and GWAS inBreeding science · 2025Article
- Fine-Mapping of a Red-Skinned Taproot Gene in Radish (Plants (Basel, Switzerland) · 2025Article
- Characterization of flavor and taste profile of different radish (Food chemistry: X · 2024Article
- Whole-Genome Sequencing and Analysis of Tumour-Forming Radish (International journal of molecular sciences · 2024Article
- Sequence and epigenetic variations of R2R3-MYB transcription factors determine the diversity of taproot skin and flesh colors in different cultivated types of radish (Raphanus sativus L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Construction of SNP fingerprints and genetic diversity analysis of radish (Frontiers in plant science · 2024Article
- Article
- Genetic Diversity Analysis and Core Germplasm Collection Construction of Radish Cultivars Based on Structure Variation Markers.International journal of molecular sciences · 2023Article
- Transcriptome-based variations effectively untangling the intraspecific relationships and selection signals in Xinyang Maojian tea population.Frontiers in plant science · 2023Article
- Article
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6 authors.
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Abstract
Radish (Raphanus sativus L.) is cultivated around the world as a vegetable crop and exhibits diverse morphological and physiological features. DNA polymorphisms are responsible for differences in traits among cultivars. In this study, we determined genome-wide single-nucleotide polymorphisms (SNPs) among geographically diverse radish accessions using the double-digest restriction site-associated DNA sequencing (ddRAD-Seq) method. A total of 52,559 SNPs was identified in a collection of over 500 radish accessions (cultivated and wild) from East Asia, South and Southeast Asia, and the Occident and Near East. In addition, 2,624 SNP sites without missing data (referred to as common SNP sites) were identified among 510 accessions. Genetic diversity analyses, based on the common SNP sites, divided the cultivated radish accessions into four main groups, each derived from four geographical areas (Japan, East Asia, South and Southeast Asia, and the Occident and Near East). Furthermore, we discuss the origin of cultivated radish and its migration from the West to East Asia. SNP data generated in this work will facilitate further genetic studies on the radish breeding and production of DNA markers.
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