Evidence map›Paper›PMID 32064000›Full record

ArticleSource code for biology and medicine2020

2DKD: a toolkit for content-based local image search.

Julian S DeVille, Daisuke Kihara, Atilla Sit

Abstract read
In one paragraph

Article in Source code for biology and medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Julian S DeVille1Department of Mathematics and Statistics, Eastern Kentucky University, 521 Lancaster Ave., Richmond, 40475 KY USA.
Daisuke Kihara2Department of Biology Sciences, Purdue University, 249 S Martin Jischke Dr, West Lafayette, 47907 IN USA.
Atilla Sit1Department of Mathematics and Statistics, Eastern Kentucky University, 521 Lancaster Ave., Richmond, 40475 KY USA.ORCID 0000-0002-7840-6348

Funding

Structural Modeling of Multifarious Protein ComplexesR01GM123055 · NIGMS · PURDUE UNIVERSITY · PI KIHARA, DAISUKE · 2017 to 2020
$1.2M
NIGMS NIH HHS R01 GM123055
6 · The paper itself

Abstract

backgroundDirect comparison of 2D images is computationally inefficient due to the need for translation, rotation, and scaling of the images to evaluate their similarity. In many biological applications, such as digital pathology and cryo-EM, often identifying specific local regions of images is of particular interest. Therefore, finding invariant descriptors that can efficiently retrieve local image patches or subimages becomes necessary.

resultsWe present a software package called Two-Dimensional Krawtchouk Descriptors that allows to perform local subimage search in 2D images. The new toolkit uses only a small number of invariant descriptors per image for efficient local image retrieval. This enables querying an image and comparing similar patterns locally across a potentially large database. We show that these descriptors appear to be useful for searching local patterns or small particles in images and demonstrate some test cases that can be helpful for both assembly software developers and their users.

conclusionsLocal image comparison and subimage search can prove cumbersome in both computational complexity and runtime, due to factors such as the rotation, scaling, and translation of the object in question. By using the 2DKD toolkit, relatively few descriptors are developed to describe a given image, and this can be achieved with minimal memory usage.

Indexed as

Cryo-electron microscopyDigital pathologyKrawtchouk polynomialsLocal descriptorsLocal image retrievalShape matchingSubimage search

Identifiers

PMID32064000
PMCPMC7011505

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.