Evidence map›Paper›PMID 32061921›Full record

ArticleGene2020

ARID3A and ARID3B induce stem promoting pathways in ovarian cancer cells.

Paige Dausinas, Kirthi Pulakanti, Sridhar Rao, Jennifer M Cole, Richard Dahl, Karen D Cowden Dahl

Open access · greenAbstract read
In one paragraph

Article in Gene, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Paige DausinasDepartment of Biochemistry and Molecular Biology, Indiana University School of Medicine-South Bend, South Bend, IN, USA; Harper Cancer Research Institute, South Bend, IN, USA. Electronic address: pbdausin@indiana.edu.
Kirthi PulakantiDepartment of Cell Biology, Neurobiology, and Anatomy, Medical College of Wisconsin, Milwaukee, WI 53226, USA; Blood Research Institute, Versiti, Milwaukee, WI 53226, USA; Department of Pediatrics, Medical College of Wisconsin, Milwaukee, WI 53226, USA. Electronic address: Kirthi.Pulakanti@bcw.edu.
Sridhar RaoDepartment of Cell Biology, Neurobiology, and Anatomy, Medical College of Wisconsin, Milwaukee, WI 53226, USA; Blood Research Institute, Versiti, Milwaukee, WI 53226, USA; Department of Pediatrics, Medical College of Wisconsin, Milwaukee, WI 53226, USA. Electronic address: Sridhar.Rao@Versiti.org.
Jennifer M ColeKabara Cancer Research Institute, Gundersen Medical Foundation, USA. Electronic address: jmcole@gundersenhealth.org.
Richard DahlHarper Cancer Research Institute, South Bend, IN, USA; Department of Microbiology and Immunology, Indiana University School of Medicine, South Bend, IN, USA. Electronic address: richdahl@iupui.edu.
Karen D Cowden DahlDepartment of Biochemistry and Molecular Biology, Indiana University School of Medicine-South Bend, South Bend, IN, USA; Harper Cancer Research Institute, South Bend, IN, USA; Kabara Cancer Research Institute, Gundersen Medical Foundation, USA; Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, USA; Indiana University Melvin and Bren Simon Cancer Center, Indianapolis, IN, USA. Electronic address: kdcowden@gundersenhealth.org.
Gundersen Health System · USMike and Josie Harper Cancer Research InstituteVersiti Blood Center of Wisconsin · US

Funding

Cohesin Mutations in Acute Myelogenous LeukemiaR01CA204231 · NCI · VERSITI WISCONSIN, INC. · PI RAO, SRIDHAR · 2017 to 2021
$1.9M
NCI NIH HHS R01 CA204231
6 · The paper itself

Abstract

ARID3A and ARID3B are paralogs from the AT-Rich interactive Domain (ARID) family. ARID3A and ARID3B associate to regulate genes in B-cells and cancer. We were the first to demonstrate that ARID3B regulates stem cell genes and promotes the cancer stem cell phenotype. Importantly, different knockout phenotypes in mice and distinct patterns of expression in adult animals suggests that ARID3A and ARID3B may have unique functions. In addition, high levels of ARID3B but not ARID3A induce cell death. Our goal was to express ARID3A, ARID3B, or both genes at a moderate level (as can be observed in cancer) and then identify ARID3 regulated genes. We transduced ovarian cancer cells with ARID3A-GFP, ARID3B-RFP, or both. RNA-sequencing was conducted. ARID3A and ARID3B regulated nearly identical sets of genes. Few genes (<5%) were uniquely regulated by ARID3A or ARID3B. ARID3A/B induced genes involved in cancer and stem cell processes including: Twist, MYCN, MMP2, GLI2, TIMP3, and WNT5B. We found that ARID3A and ARID3B also induced expression of each other, providing evidence of the cooperativity. While ARID3A and ARID3B likely have unique functions in distinct contexts, they are largely capable of regulating the same stem cell genes in cancer cells. This study provides a comprehensive list of genes and pathways regulated by ARID3A and ARID3B in ovarian cancer cells.

Indexed as

Base SequenceB-LymphocytesCell Line, TumorDNA-Binding ProteinsFemaleHumansNeoplastic Stem CellsOvarian NeoplasmsTranscription FactorsARID3A protein, humanARID3B protein, humanDNA-Binding ProteinsTranscription FactorsARID3AARID3BCancerStemnessTranscription factors

Identifiers

PMID32061921
PMCPMC7384259
OpenAlexW3005898462

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.