Evidence map›Paper›PMID 32060411›Full record

ArticleCommunications biology2020

High-contrast, synchronous volumetric imaging with selective volume illumination microscopy.

Thai V Truong, Daniel B Holland, Sara Madaan, Andrey Andreev, Kevin Keomanee-Dizon, Josh V Troll, Daniel E S Koo, Margaret J McFall-Ngai, Scott E Fraser

Erratum issuedOpen access · goldAbstract readVideo-Audio Media
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
8.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Super Time-Resolved Tomography.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  5. Article
  6. Light-field deep learning enables high-throughput, scattering-mitigated calcium imaging.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Article
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  12. Whole-brain imaging of freely-moving zebrafish.Frontiers in neuroscience · 2023
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
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  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Thai V Truong *Translational Imaging Center, University of Southern California, Los Angeles, CA, 90089, USA. tvtruong@usc.edu.ORCID http://orcid.org/0000-0001-6475-8935
Daniel B Holland *Translational Imaging Center, University of Southern California, Los Angeles, CA, 90089, USA.
Sara Madaan *Translational Imaging Center, University of Southern California, Los Angeles, CA, 90089, USA.
Andrey AndreevTranslational Imaging Center, University of Southern California, Los Angeles, CA, 90089, USA.
Kevin Keomanee-DizonTranslational Imaging Center, University of Southern California, Los Angeles, CA, 90089, USA.ORCID http://orcid.org/0000-0002-5884-4869
Josh V TrollTranslational Imaging Center, University of Southern California, Los Angeles, CA, 90089, USA.
Daniel E S KooTranslational Imaging Center, University of Southern California, Los Angeles, CA, 90089, USA.
Margaret J McFall-NgaiPacific Biosciences Research Center, University of Hawaii at Manoa, Honolulu, HI, 96822, USA.
Scott E FraserTranslational Imaging Center, University of Southern California, Los Angeles, CA, 90089, USA. sfraser@provost.usc.edu.ORCID http://orcid.org/0000-0002-5377-0223
University of Southern California · USUniversity of Hawaiʻi at Mānoa · US

Funding

Dynamic mapping of the complete synaptome using recombinant probesR01MH107238 · NIMH · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ARNOLD, DONALD B, FRASER, SCOTT E · 2014 to 2018
$9.7M
Vibrio fischeri as a Model for Bacterial ColonizationR37AI050661 · NIAID · UNIVERSITY OF HAWAII AT MANOA · PI MARGARET J MC FALL-NGAI, Edward G Ruby · 2018 to 2026
$5.4M
Vibrio Virulence Determinants in a Benign ColonizationR01OD011024 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI MC FALL-NGAI, MARGARET J, RUBY, EDWARD G · 2012 to 2020
$3.9M
NIAID NIH HHS R37 AI050661NIH HHS R01 OD011024NIMH NIH HHS R01 MH107238
6 · The paper itself

Abstract

Light-field fluorescence microscopy uniquely provides fast, synchronous volumetric imaging by capturing an extended volume in one snapshot, but often suffers from low contrast due to the background signal generated by its wide-field illumination strategy. We implemented light-field-based selective volume illumination microscopy (SVIM), where illumination is confined to only the volume of interest, removing the background generated from the extraneous sample volume, and dramatically enhancing the image contrast. We demonstrate the capabilities of SVIM by capturing cellular-resolution 3D movies of flowing bacteria in seawater as they colonize their squid symbiotic partner, as well as of the beating heart and brain-wide neural activity in larval zebrafish. These applications demonstrate the breadth of imaging applications that we envision SVIM will enable, in capturing tissue-scale 3D dynamic biological systems at single-cell resolution, fast volumetric rates, and high contrast to reveal the underlying biology.

Indexed as

AnimalsBrainDecapodiformesHeartHost Microbial InteractionsImage Processing, Computer-AssistedImaging, Three-DimensionalLarvaLightMicroscopy, FluorescenceOrgan SizeSeawaterVideo RecordingZebrafish

Identifiers

PMID32060411
PMCPMC7021898
OpenAlexW3006417853

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.