Evidence map›Paper›PMID 32060406›Full record

ArticleLeukemia2020

Multiple Myeloma DREAM Challenge reveals epigenetic regulator PHF19 as marker of aggressive disease.

Mike J Mason, Carolina Schinke, Christine L P Eng, Fadi Towfic, Fred Gruber, Andrew Dervan, Brian S White, Aditya Pratapa, Yuanfang Guan, Hongjie Chen and 32 more

Open access · hybridAbstract read
In one paragraph

Article in Leukemia, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 52 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

42 authors at 18 institutions in 6 countries.

Mike J Mason *Sage Bionetworks, Seattle, WA, USA. michael.mason@sagebase.org.ORCID http://orcid.org/0000-0002-5652-7739
Carolina Schinke *Myeloma Center, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Christine L P Eng *Computational & Systems Biology, Genome Institute of Singapore, Singapore, Singapore.
Fadi Towfic *Celgene Corporation, Summit, NJ, USA.
Fred Gruber *GNS Healthcare, Cambridge, MA, USA.
Andrew Dervan *Celgene, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-6482-8654
Brian S WhiteSage Bionetworks, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-2954-4410
Aditya PratapaDepartment of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA.ORCID http://orcid.org/0000-0002-3323-6250
Yuanfang GuanDepartment of Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA.
Hongjie ChenShanghai Jiao Tong University, Shanghai, China.
Yi CuiStanford University School of Medicine, Palo Alto, CA, USA.
Bailiang LiDepartment of Radiation Oncology, Stanford University School of Medicine, Palo Alto, CA, USA.
Thomas YuSage Bionetworks, Seattle, WA, USA.
Elias Chaibub NetoSage Bionetworks, Seattle, WA, USA.
Konstantinos MavrommatisCelgene Corporation, Summit, NJ, USA.
Maria OrtizPredictive Sciences, Celgene Corporation, Seville, Spain.
Valeriy LyzogubovUniversity of Arkansas for Medical Sciences, Little Rock, AR, USA.
Kamlesh BishtCelgene Corporation, Summit, NJ, USA.
Hongyue Y DaiM2Gen, Tampa, FL, USA.
Frank SchmitzCelgene, Seattle, WA, USA.
Erin FlyntCelgene Corporation, Summit, NJ, USA.
Dan RozelleRancho BioSciences, San Diego, CA, USA.
Samuel A DanzigerCelgene, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-5669-414X
Alexander RatushnyCelgene, Seattle, WA, USA.
Multiple Myeloma DREAM Consortium
William S DaltonDepartment of Malignant Hematology, Moffitt Cancer Center & Research Institute, Tampa, FL, USA.
Hartmut GoldschmidtMedizinische Klinik V, Universitätsklinikum Heidelberg, Heidelberg, Germany.
Herve Avet-LoiseauInstitut Universitaire du Cancer Oncopole, Toulouse, France.
Mehmet SamurDepartment of Data Sciences, Dana-Farber Cancer Institute, Boston, MA, USA.
Boris HayeteGNS Healthcare, Cambridge, MA, USA.
Pieter SonneveldErasmus MC Cancer Institute, Rotterdam, The Netherlands.
Kenneth H ShainDepartment of Malignant Hematology, Moffitt Cancer Center, Tampa, FL, USA.
Nikhil MunshiDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Daniel AuclairMultiple Myeloma Research Foundation, Norwalk, CT, USA.
Dirk HoseMedizinische Klinik V, Universitätsklinikum Heidelberg, Heidelberg, Germany.
Gareth MorganUniversity of Arkansas for Medical Sciences, Little Rock, AR, USA.
Matthew TrotterPredictive Sciences, Celgene Corporation, Seville, Spain.
Douglas Bassett *Celgene, Seattle, WA, USA.
Jonathan Goke *Computational & Systems Biology, Genome Institute of Singapore, Singapore, Singapore.ORCID http://orcid.org/0000-0002-0825-4991
Brian A Walker *Myeloma Center, University of Arkansas for Medical Sciences, Little Rock, AR, USA.ORCID http://orcid.org/0000-0002-8615-6254
Anjan Thakurta *Celgene Corporation, Summit, NJ, USA.
Justin Guinney *Sage Bionetworks, Seattle, WA, USA.ORCID http://orcid.org/0000-0003-1477-1888
Sage Bionetworks · USUniversity of Arkansas for Medical Sciences · USGenome Institute of Singapore · SGGNS Healthcare (United States) · USHeidelberg University · DEMoffitt Cancer Center · USErasmus MC Cancer Institute · NLHarvard University · USIndiana University – Purdue University Indianapolis · USInstitut universitaire du cancer de Toulouse Oncopole · FRMultiple Myeloma Research Foundation · USPalo Alto University · USRancho BioSciences (United States) · USShanghai Jiao Tong University · CNStanford University · USUniversity of Michigan · USVA Boston Healthcare System · USVirginia Tech · US

Funding

CRM1 INHIBITORS SENSITIZE MULTIPLE MYELOMA CELLS TO TOPOISOMERASE II AND PROTEASOME INHIBITORSR01CA194051 · NCI · H. LEE MOFFITT CANCER CTR & RES INST · PI SHAIN, KENNETH HAUN · 2015 to 2019
$2.1M
Arkansas Center for Clinical Translational ResearchKL2TR000063 · NCATS · UNIV OF ARKANSAS FOR MED SCIS · PI BECK, CORNELIA MARIE, JAMES, LAURA P · 2012 to 2014
$459k
MOLECULAR MANIPULATION TO ENHANCE ANTI-MYELOMA RESPONSEI01BX001584 · VA · VA BOSTON HEALTH CARE SYSTEM · PI MUNSHI, NIKHIL C. · 2013 to 2025
–
BLRD VA I01 BX001584NCATS NIH HHS KL2 TR000063NCI NIH HHS R01 CA194051
6 · The paper itself

Abstract

While the past decade has seen meaningful improvements in clinical outcomes for multiple myeloma patients, a subset of patients does not benefit from current therapeutics for unclear reasons. Many gene expression-based models of risk have been developed, but each model uses a different combination of genes and often involves assaying many genes making them difficult to implement. We organized the Multiple Myeloma DREAM Challenge, a crowdsourced effort to develop models of rapid progression in newly diagnosed myeloma patients and to benchmark these against previously published models. This effort lead to more robust predictors and found that incorporating specific demographic and clinical features improved gene expression-based models of high risk. Furthermore, post-challenge analysis identified a novel expression-based risk marker, PHF19, which has recently been found to have an important biological role in multiple myeloma. Lastly, we show that a simple four feature predictor composed of age, ISS, and expression of PHF19 and MMSET performs similarly to more complex models with many more gene expression features included.

Indexed as

Epigenesis, GeneticGene Expression Regulation, NeoplasticModels, StatisticalBiomarkers, TumorCell CycleCell ProliferationClinical Trials as TopicDatabases, FactualDatasets as TopicDNA-Binding ProteinsHumansMultiple MyelomaTranscription FactorsTumor Cells, CulturedBiomarkers, TumorDNA-Binding ProteinsPHF19 protein, humanTranscription Factors

Identifiers

PMID32060406
PMCPMC7326699
OpenAlexW3006312393

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.