Evidence map›Paper›PMID 32060358›Full record

ArticleNature communications2020

Capsid protein structure in Zika virus reveals the flavivirus assembly process.

Ter Yong Tan, Guntur Fibriansah, Victor A Kostyuchenko, Thiam-Seng Ng, Xin-Xiang Lim, Shuijun Zhang, Xin-Ni Lim, Jiaqi Wang, Jian Shi, Marc C Morais and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
16.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 126 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Lipid Architecture in the Zika Virus.ACS physical chemistry Au · 2026
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. An Updated Review of Potential Drug Targets for Japanese Encephalitis.Central nervous system agents in medicinal chemistry · 2026
    Review
  12. An ultrapotent human antibody neutralizes all maturation states of Zika virus.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Functional Roles and Host Interactions ofPathogens (Basel, Switzerland) · 2025
    Review
  18. Article
  19. Article
  20. Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 3 countries.

Ter Yong Tan *Programme in Emerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, 169857, Singapore.
Guntur Fibriansah *Programme in Emerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, 169857, Singapore.ORCID http://orcid.org/0000-0002-9990-3335
Victor A KostyuchenkoProgramme in Emerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, 169857, Singapore.
Thiam-Seng NgProgramme in Emerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, 169857, Singapore.
Xin-Xiang LimDepartment of Biological Sciences, National University of Singapore, Singapore, 117558, Singapore.
Shuijun ZhangProgramme in Emerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, 169857, Singapore.
Xin-Ni LimProgramme in Emerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, 169857, Singapore.ORCID http://orcid.org/0000-0001-8117-3613
Jiaqi WangProgramme in Emerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, 169857, Singapore.
Jian ShiCryoEM Unit, Department of Biological Sciences, National University of Singapore, Singapore, 117557, Singapore.
Marc C MoraisDepartment of Biochemistry and Molecular Biology, Sealy Center for Structural and Molecular Biophysics, University of Texas Medical Branch, Galveston, TX, 77555-0647, USA.
Davide CortiHumabs BioMed SA, a subsidiary of Vir Biotechnology, Inc., CH-6500, Bellinzona, Switzerland.ORCID http://orcid.org/0000-0002-5797-1364
Shee-Mei LokProgramme in Emerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, 169857, Singapore. sheemei.lok@duke-nus.edu.sg.ORCID http://orcid.org/0000-0003-4631-8041
National University of Singapore · SGThe University of Texas Medical Branch at Galveston · USVir Biotechnology (Switzerland) · CH

Funding

The DNA Packaging Motor of Bacteriophage phi29R01GM122979 · NIGMS · UNIVERSITY OF MINNESOTA · PI JARDINE, PAUL JAMES, MORAIS, MARC · 2017 to 2024
$4.1M
Structure and Function of Essential Nucleoprotein ComplexesAlong a Viral Genome Packaging PathwayR01GM127365 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI Carlos Enrique Catalano, Marc Morais · 2018 to 2026
$3.5M
Role of ARF5 and ER/plasma membrane contacts in the control of cell migrationR01GM127361 · NIGMS · UNIVERSITY OF VIRGINIA · PI CASANOVA, JAMES E. · 2019 to 2022
$1.4M
NIGMS NIH HHS R01 GM122979NIGMS NIH HHS R01 GM127361NIGMS NIH HHS R01 GM127365
6 · The paper itself

Abstract

Structures of flavivirus (dengue virus and Zika virus) particles are known to near-atomic resolution and show detailed structure and arrangement of their surface proteins (E and prM in immature virus or M in mature virus). By contrast, the arrangement of the capsid proteins:RNA complex, which forms the core of the particle, is poorly understood, likely due to inherent dynamics. Here, we stabilize immature Zika virus via an antibody that binds across the E and prM proteins, resulting in a subnanometer resolution structure of capsid proteins within the virus particle. Fitting of the capsid protein into densities shows the presence of a helix previously thought to be removed via proteolysis. This structure illuminates capsid protein quaternary organization, including its orientation relative to the lipid membrane and the genomic RNA, and its interactions with the transmembrane regions of the surface proteins. Results show the capsid protein plays a central role in the flavivirus assembly process.

Indexed as

Virus AssemblyCapsidCapsid ProteinsHumansRNA, ViralZika VirusZika Virus InfectionCapsid ProteinsRNA, Viral

Identifiers

PMID32060358
PMCPMC7021721
OpenAlexW3005839808

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.