Evidence map›Paper›PMID 32060277›Full record

ArticleNature communications2020

Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff.

Robert VanBuren, Ching Man Wai, Xuewen Wang, Jeremy Pardo, Alan E Yocca, Hao Wang, Srinivasa R Chaluvadi, Guomin Han, Douglas Bryant, Patrick P Edger and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 94 papers.

0numbers the graph read from it
0cells of the map it votes in
94citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

94 citing papers in PubMed.

  1. Towards the Recognition of Ethiopian Teff (Foods (Basel, Switzerland) · 2026
    Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Subgenome Dominance in Allotetraploid Actinidia valvata Regulates RNA mAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Millets for a sustainable future.Journal of experimental botany · 2025
    Review
  17. Review
  18. Article
  19. Review
  20. Review

34 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Robert VanBuren *Department of Horticulture, Michigan State University, East Lansing, MI, 48824, USA. bobvanburen@gmail.com.ORCID http://orcid.org/0000-0003-2133-2760
Ching Man Wai *Department of Horticulture, Michigan State University, East Lansing, MI, 48824, USA.ORCID http://orcid.org/0000-0002-2913-5721
Xuewen Wang *Department of Genetics, University of Georgia, Athens, GA, 30602, USA.
Jeremy PardoDepartment of Horticulture, Michigan State University, East Lansing, MI, 48824, USA.ORCID http://orcid.org/0000-0003-3419-095X
Alan E YoccaDepartment of Horticulture, Michigan State University, East Lansing, MI, 48824, USA.ORCID http://orcid.org/0000-0002-0974-364X
Hao WangDepartment of Genetics, University of Georgia, Athens, GA, 30602, USA.
Srinivasa R ChaluvadiDepartment of Genetics, University of Georgia, Athens, GA, 30602, USA.
Guomin HanDepartment of Genetics, University of Georgia, Athens, GA, 30602, USA.ORCID http://orcid.org/0000-0002-1199-4448
Douglas BryantDonald Danforth Plant Science Center, St. Louis, MO, 63132, USA.
Patrick P EdgerDepartment of Horticulture, Michigan State University, East Lansing, MI, 48824, USA.ORCID http://orcid.org/0000-0001-6836-3041
Joachim MessingWaksman Institute of Microbiology, Rutgers University, Springfield, USA.ORCID http://orcid.org/0000-0001-8260-2643
Mark E SorrellsDepartment of Plant Breeding and Genetics, Cornell University, Ithaca, NY, USA.
Todd C MocklerDonald Danforth Plant Science Center, St. Louis, MO, 63132, USA.ORCID http://orcid.org/0000-0002-0462-5775
Jeffrey L BennetzenDepartment of Genetics, University of Georgia, Athens, GA, 30602, USA.ORCID http://orcid.org/0000-0003-1762-8307
Todd P MichaelJ. Craig Venter Institute, La Jolla, CA, 92037, USA. toddpmichael@gmail.com.ORCID http://orcid.org/0000-0001-6272-2875

Funding

Plant Biotechnology for Health and SustainabilityT32GM110523 · NIGMS · MICHIGAN STATE UNIVERSITY · PI LAST, ROBERT LOUIS · 2014 to 2023
$2.2M
NIGMS NIH HHS T32 GM110523
6 · The paper itself

Abstract

Teff (Eragrostis tef) is a cornerstone of food security in the Horn of Africa, where it is prized for stress resilience, grain nutrition, and market value. Here, we report a chromosome-scale assembly of allotetraploid teff (variety Dabbi) and patterns of subgenome dynamics. The teff genome contains two complete sets of homoeologous chromosomes, with most genes maintaining as syntenic gene pairs. TE analysis allows us to estimate that the teff polyploidy event occurred ~1.1 million years ago (mya) and that the two subgenomes diverged ~5.0 mya. Despite this divergence, we detect no large-scale structural rearrangements, homoeologous exchanges, or biased gene loss, in contrast to many other allopolyploids. The two teff subgenomes have partitioned their ancestral functions based on divergent expression across a diverse expression atlas. Together, these genomic resources will be useful for accelerating breeding of this underutilized grain crop and for fundamental insights into polyploid genome evolution.

Indexed as

Evolution, MolecularGenome, PlantAfricaEragrostisPhylogenyTetraploidy

Identifiers

PMID32060277
PMCPMC7021729

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.