Evidence map›Paper›PMID 32060274›Full record

ArticleNature communications2020

Immunoproteasome expression is associated with better prognosis and response to checkpoint therapies in melanoma.

Shelly Kalaora, Joo Sang Lee, Eilon Barnea, Ronen Levy, Polina Greenberg, Michal Alon, Gal Yagel, Gitit Bar Eli, Roni Oren, Aviyah Peri and 8 more

Abstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers.

0numbers the graph read from it
0cells of the map it votes in
109citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

109 citing papers in PubMed.

  1. ISA101 and nivolumab for HPV-16Journal for immunotherapy of cancer · 2022
    Trial
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  8. Hypoxic stress granules trigger immunogenic dormancy in lung cancer.bioRxiv : the preprint server for biology · 2026
    Article
  9. Review
  10. Review
  11. Article
  12. Article
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  15. Article
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  18. Article
  19. Article
  20. Article

49 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Shelly Kalaora *Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.ORCID http://orcid.org/0000-0003-1645-4587
Joo Sang Lee *Cancer Data Science Lab, National Cancer Institute, Bethesda, MD, USA.
Eilon BarneaDepartment of Biology, Technion, Haifa, Israel.
Ronen LevyDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
Polina GreenbergDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
Michal AlonDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
Gal YagelDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.ORCID http://orcid.org/0000-0002-9518-5989
Gitit Bar EliDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
Roni OrenDepartment of Veterinary Resources, Weizmann Institute of Science, Rehovot, Israel.
Aviyah PeriDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
Sushant PatkarCancer Data Science Lab, National Cancer Institute, Bethesda, MD, USA.
Lital BittonDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
Steven A RosenbergThe Surgery Branch, National Cancer Institute, Bethesda, MD, USA.
Michal LotemSharett Institute of Oncology, Hadassah Medical School, Jerusalem, Israel.
Yishai LevinNancy and Stephen Grand Israel National Center for Personalized Medicine, Weizmann Institute of Science, Rehovot, Israel.
Arie AdmonDepartment of Biology, Technion, Haifa, Israel.
Eytan RuppinCancer Data Science Lab, National Cancer Institute, Bethesda, MD, USA. eytan.ruppin@nih.gov.ORCID http://orcid.org/0000-0002-7862-3940
Yardena SamuelsDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel. Yardena.Samuels@weizmann.ac.il.

Funding

Adoptive Cell Transfer Immunotherapy of CancerZIABC010984 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI ROSENBERG, STEVEN · 2009 to 2025
$56.8M
Building on the success of the adoptive immunotherapy of cancerZIABC010763 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI ROSENBERG, STEVEN · 2009 to 2020
$25.0M
6 · The paper itself

Abstract

Predicting the outcome of immunotherapy treatment in melanoma patients is challenging. Alterations in genes involved in antigen presentation and the interferon gamma (IFNγ) pathway play an important role in the immune response to tumors. We describe here that the overexpression of PSMB8 and PSMB9, two major components of the immunoproteasome, is predictive of better survival and improved response to immune-checkpoint inhibitors of melanoma patients. We study the mechanism underlying this connection by analyzing the antigenic peptide repertoire of cells that overexpress these subunits using HLA peptidomics. We find a higher response of patient-matched tumor infiltrating lymphocytes against antigens diferentially presented after immunoproteasome overexpression. Importantly, we find that PSMB8 and PSMB9 expression levels are much stronger predictors of melanoma patients' immune response to checkpoint inhibitors than the tumors' mutational burden. These results suggest that PSMB8 and PSMB9 expression levels can serve as important biomarkers for stratifying melanoma patients for immune-checkpoint treatment.

Indexed as

Antigen PresentationCysteine EndopeptidasesHumansImmunotherapyInterferon-gammaMelanomaPrognosisProteasome Endopeptidase ComplexCysteine EndopeptidasesInterferon-gammaLMP-2 proteinLMP7 proteinProteasome Endopeptidase Complex

Identifiers

PMID32060274
PMCPMC7021791

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.