Evidence map›Paper›PMID 32055025›Full record

ReviewNature reviews. Microbiology2020

Population genomics of Klebsiella pneumoniae.

Kelly L Wyres, Margaret M C Lam, Kathryn E Holt

Abstract readReview
PubMed Publisher
In one paragraph

Review in Nature reviews. Microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 724 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
724citing papers in PubMed, 1 pooled it
39.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

724 citing papers in PubMed, 1 synthesis or guideline pooled it, 1,088 citations in OpenAlex.

  1. Pooled it
  2. ElevatedEmerging microbes & infections · 2026
    Article
  3. Emergence ofVirulence · 2026
    Article
  4. Within-patient carbapenem heteroresistance inCurrent research in microbial sciences · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Applied and environmental microbiology · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Emerging hypervirulentInfectious medicine · 2026
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Hypermucoviscosity inJournal of bacteriology · 2026
    Review
  20. Global Trends in Antimicrobial Resistance-Related Mortality fromTropical medicine and infectious disease · 2026
    Article

664 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Kelly L WyresDepartment of Infectious Diseases, Monash University, Melbourne, Victoria, Australia.ORCID http://orcid.org/0000-0002-4033-6639
Margaret M C LamDepartment of Infectious Diseases, Monash University, Melbourne, Victoria, Australia.ORCID http://orcid.org/0000-0001-9590-6849
Kathryn E HoltDepartment of Infectious Diseases, Monash University, Melbourne, Victoria, Australia. kathryn.holt@monash.edu.ORCID http://orcid.org/0000-0003-3949-2471
Monash University · AULondon School of Hygiene & Tropical Medicine · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Klebsiella pneumoniae is a common cause of antimicrobial-resistant opportunistic infections in hospitalized patients. The species is naturally resistant to penicillins, and members of the population often carry acquired resistance to multiple antimicrobials. However, knowledge of K. pneumoniae ecology, population structure or pathogenicity is relatively limited. Over the past decade, K. pneumoniae has emerged as a major clinical and public health threat owing to increasing prevalence of healthcare-associated infections caused by multidrug-resistant strains producing extended-spectrum β-lactamases and/or carbapenemases. A parallel phenomenon of severe community-acquired infections caused by 'hypervirulent' K. pneumoniae has also emerged, associated with strains expressing acquired virulence factors. These distinct clinical concerns have stimulated renewed interest in K. pneumoniae research and particularly the application of genomics. In this Review, we discuss how genomics approaches have advanced our understanding of K. pneumoniae taxonomy, ecology and evolution as well as the diversity and distribution of clinically relevant determinants of pathogenicity and antimicrobial resistance. A deeper understanding of K. pneumoniae population structure and diversity will be important for the proper design and interpretation of experimental studies, for interpreting clinical and public health surveillance data and for the design and implementation of novel control strategies against this important pathogen.

Indexed as

MetagenomicsAnimalsDrug Resistance, BacterialEcologyHumansKlebsiella pneumoniaePhylogenyVirulence

Identifiers

PMID32055025
OpenAlexW3005968613

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.