Evidence map›Paper›PMID 32054992›Full record

ArticleThe pharmacogenomics journal2020

Combining clinical and candidate gene data into a risk score for azathioprine-associated leukopenia in routine clinical practice.

Prathima Anandi, Alyson L Dickson, QiPing Feng, Wei-Qi Wei, William D Dupont, Dale Plummer, Ge Liu, Rany Octaria, Katherine A Barker, Vivian K Kawai and 5 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in The pharmacogenomics journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Observational
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 1 institution in 1 country.

Prathima AnandiDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
Alyson L DicksonDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
QiPing FengDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
Wei-Qi WeiDepartment of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, TN, USA.
William D DupontDepartment of Biostatistics, Vanderbilt University Medical Center, Nashville, TN, USA.
Dale PlummerDepartment of Biostatistics, Vanderbilt University Medical Center, Nashville, TN, USA.
Ge LiuDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
Rany OctariaDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
Katherine A BarkerDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
Vivian K KawaiDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
Kelly BirdwellDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
Nancy J CoxDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
Adriana HungDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
C Michael SteinDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
Cecilia P ChungDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA. c.chung@vumc.org.
Vanderbilt University Medical Center · US

Funding

Vanderbilt Institute for Clinical and Translational Research (VICTR) -Identifying correlates of functional immunity in SARS-CoV-2 convalescent plasmaUL1TR002243 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Paul A. Harris, Wesley H Self · 2017 to 2026
$130.7M
VANDERBILT UNIVERSITY CTSA FOR PEDIATRIC RESEARCHUL1RR024975 · NCRR · VANDERBILT UNIVERSITY · PI BERNARD, GORDON RAPHAEL · 2007 to 2011
$45.7M
The Vanderbilt Institute for Clinical and Translational Research (VICTR)UL1TR000445 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BERNARD, GORDON RAPHAEL · 2012 to 2016
$41.4M
Pharmacogenomics of Arrhythmia TherapyU19HL065962 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RODEN, DAN M · 2010 to 2014
$17.4M
Understanding and preventing HLA-associated drug reactionsP50GM115305 · NIGMS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI DENNY, JOSHUA C. · 2015 to 2019
$13.0M
CLINICAL PHARMACOLOGY TRAINING PROGRAMT32GM007569 · NIGMS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Bjorn C Knollmann · 1985 to 2026
$12.4M
The Genetic Epemiology of Multiple SclerosisR01NS032830 · NINDS · VANDERBILT UNIVERSITY · PI HAINES, JONATHAN L · 1995 to 2010
$8.9M
Epidemiologic Architecture for Genes Linked to Environment (EAGLE)U01HG004798 · NHGRI · VANDERBILT UNIVERSITY · PI CRAWFORD, DANA C · 2008 to 2013
$8.8M
VESPA: Vanderbilt Electronic Systems for Pharmacogenomic AssessmentRC2GM092618 · NIGMS · VANDERBILT UNIVERSITY · PI DENNY, JOSHUA C., RODEN, DAN M · 2009 to 2010
$6.4M
Interdisciplinary Training in Rheumatic DiseasesT32AR059039 · NIAMS · VANDERBILT UNIVERSITY · PI Tracy Minan Frech, AMY S MAJOR · 2010 to 2026
$4.3M
Vanderbilt Genome Electronic Records ProjectU01HG006378 · NHGRI · VANDERBILT UNIVERSITY · PI RODEN, DAN M · 2011 to 2014
$4.0M
Understanding the genetic risk underlying racial disparities in uterine fibroids - Diversity SupplementR01HD074711 · NICHD · VANDERBILT UNIVERSITY MEDICAL CENTER · PI VELEZ EDWARDS, DIGNA R · 2013 to 2017
$2.9M
CSRD VA I01 CX001897NCATS NIH HHS UL1 TR000445NCATS NIH HHS UL1 TR002243NCRR NIH HHS S10 RR025141NCRR NIH HHS UL1 RR024975NHGRI NIH HHS U01 HG004798NHGRI NIH HHS U01 HG006378NHLBI NIH HHS U19 HL065962NIAMS NIH HHS R01 AR073764NIAMS NIH HHS T32 AR059039NICHD NIH HHS R01 HD074711NIGMS NIH HHS K23 GM100183NIGMS NIH HHS K23 GM117395NIGMS NIH HHS P50 GM115305NIGMS NIH HHS R01 GM109145NIGMS NIH HHS R01 GM126535NIGMS NIH HHS R35 GM131770NIGMS NIH HHS RC2 GM092618NIGMS NIH HHS T32 GM007569NIH HHS T32AR059039NIH HHS T32GM007569NINDS NIH HHS R01 NS032830
6 · The paper itself

Abstract

Leukopenia is a serious, frequent side effect associated with azathioprine use. Currently, we use thiopurine methyltransferase (TPMT) testing to predict leukopenia in patients taking azathioprine. We hypothesized that a risk score incorporating additional clinical and genetic variables would improve the prediction of azathioprine-associated leukopenia. In the discovery phase, we developed four risk score models: (1) age, sex, and TPMT metabolizer status; (2) model 1 plus additional clinical variables; (3) sixty candidate single nucleotide polymorphisms; and (4) model 2 plus model 3. The area under the receiver-operating-characteristic curve (AUC) of the risk scores was 0.59 (95% CI: 0.54-0.64), 0.75 (0.71-0.80), 0.66 (0.61-0.71), and 0.78 (0.74-0.82) for models 1, 2, 3, and 4, respectively. During the replication phase, models 2 and 4 (AUC = 0.64, 95% CI: 0.59-0.70 and AUC = 0.63, 95% CI: 0.58-0.69, respectively) were significant in an independent group. Compared with TPMT testing alone, additional genetic and clinical variables improve the prediction of azathioprine-associated leukopenia.

Indexed as

Pharmacogenomic VariantsPolymorphism, Single NucleotideAdultAge FactorsAzathioprineDatabases, GeneticFemaleGenetic Association StudiesHumansImmunosuppressive AgentsLeukopeniaMaleMethyltransferasesMiddle AgedPharmacogeneticsPilot ProjectsAzathioprineImmunosuppressive AgentsMethyltransferasesTPMT protein, human

Identifiers

PMID32054992
PMCPMC7426242
OpenAlexW3005882741

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.