Evidence map›Paper›PMID 32054973›Full record

ArticleCommunications biology2020

Deletion of a conserved Gata2 enhancer impairs haemogenic endothelium programming and adult Zebrafish haematopoiesis.

Tomasz Dobrzycki, Christopher B Mahony, Monika Krecsmarik, Cansu Koyunlar, Rossella Rispoli, Joke Peulen-Zink, Kirsten Gussinklo, Bakhta Fedlaoui, Emma de Pater, Roger Patient and 1 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 35 citations in OpenAlex.

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  8. Transcription factors regulating vasculogenesis and angiogenesis.Developmental dynamics : an official publication of the American Association of Anatomists · 2024
    Review
  9. Article
  10. Article
  11. The role of GATA2 in adult hematopoiesis and cell fate determination.Frontiers in cell and developmental biology · 2023
    Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Review
  18. Using the Zebrafish as a Genetic Model to Study Erythropoiesis.International journal of molecular sciences · 2021
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Tomasz DobrzyckiMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, John Radcliffe Hospital, University of Oxford, Oxford, OX3 9DS, UK.
Christopher B MahonyInstitute of Cancer and Genomic Sciences, College of Medical and Dental Sciences, University of Birmingham, Birmingham, B15 2TT, UK.
Monika KrecsmarikMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, John Radcliffe Hospital, University of Oxford, Oxford, OX3 9DS, UK.
Cansu KoyunlarDepartment of Hematology, Erasmus MC, Rotterdam, The Netherlands.
Rossella RispoliMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, John Radcliffe Hospital, University of Oxford, Oxford, OX3 9DS, UK.
Joke Peulen-ZinkDepartment of Hematology, Erasmus MC, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0001-6829-244X
Kirsten GussinkloDepartment of Hematology, Erasmus MC, Rotterdam, The Netherlands.
Bakhta FedlaouiInstitute of Cancer and Genomic Sciences, College of Medical and Dental Sciences, University of Birmingham, Birmingham, B15 2TT, UK.
Emma de PaterDepartment of Hematology, Erasmus MC, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0002-7195-6769
Roger PatientMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, John Radcliffe Hospital, University of Oxford, Oxford, OX3 9DS, UK.
Rui MonteiroMRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, John Radcliffe Hospital, University of Oxford, Oxford, OX3 9DS, UK. r.monteiro@bham.ac.uk.ORCID http://orcid.org/0000-0002-4223-8506
Erasmus MC · NLJohn Radcliffe Hospital · GBUniversity of Birmingham · GBBharat Heavy Electricals (India) · INGuy's and St Thomas' NHS Foundation Trust · GB

Funding

Biotechnology and Biological Sciences Research CouncilBritish Heart Foundation FS/13/50/30436Medical Research Council G0902418Medical Research Council MC_UU_12009Medical Research Council MC_UU_12009/8Wellcome TrustWellcome Trust WT102345/Z/13/Z
6 · The paper itself

Abstract

Gata2 is a key transcription factor required to generate Haematopoietic Stem and Progenitor Cells (HSPCs) from haemogenic endothelium (HE); misexpression of Gata2 leads to haematopoietic disorders. Here we deleted a conserved enhancer (i4 enhancer) driving pan-endothelial expression of the zebrafish gata2a and showed that Gata2a is required for HE programming by regulating expression of runx1 and of the second Gata2 orthologue, gata2b. By 5 days, homozygous gata2a

Indexed as

Conserved SequenceEnhancer Elements, GeneticSequence DeletionAge FactorsAnimalsBase SequenceCellular ReprogrammingChromatinEndotheliumGATA2 Transcription FactorGene Expression Regulation, DevelopmentalGenes, ReporterGenetic LociHematopoiesisHematopoietic Stem CellsZebrafishChromatinGATA2 Transcription Factor

Identifiers

PMID32054973
PMCPMC7018942
OpenAlexW3006281915

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.