Evidence map›Paper›PMID 32054839›Full record

ArticleNature communications2020

A conserved strategy of chalcone isomerase-like protein to rectify promiscuous chalcone synthase specificity.

Toshiyuki Waki, Ryo Mameda, Takuya Nakano, Sayumi Yamada, Miho Terashita, Keisuke Ito, Natsuki Tenma, Yanbing Li, Naoto Fujino, Kaichi Uno and 11 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 122 citations in OpenAlex.

  1. Article
  2. Review
  3. PlantInternational journal of molecular sciences · 2026
    Review
  4. Tuning reductase activity in monoterpene indole alkaloid biosynthesis.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
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  7. Article
  8. Article
  9. Review
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  11. De novo biosynthesis ofBiodesign research · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Development of phytochemical genomics: From decoding metabolome to functional genomics and biotechnology of plant metabolism.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2025
    Review
  18. Review
  19. Article
  20. Review

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 8 institutions in 2 countries.

Toshiyuki WakiGraduate School of Engineering, Tohoku University, Aza Aoba, Aramaki, Aoba 6-6-11, Sendai, Miyagi, 980-8579, Japan.
Ryo MamedaGraduate School of Engineering, Tohoku University, Aza Aoba, Aramaki, Aoba 6-6-11, Sendai, Miyagi, 980-8579, Japan.
Takuya NakanoGraduate School of Engineering, Tohoku University, Aza Aoba, Aramaki, Aoba 6-6-11, Sendai, Miyagi, 980-8579, Japan.
Sayumi YamadaGraduate School of Engineering, Tohoku University, Aza Aoba, Aramaki, Aoba 6-6-11, Sendai, Miyagi, 980-8579, Japan.
Miho TerashitaGraduate School of Engineering, Tohoku University, Aza Aoba, Aramaki, Aoba 6-6-11, Sendai, Miyagi, 980-8579, Japan.
Keisuke ItoGraduate School of Engineering, Tohoku University, Aza Aoba, Aramaki, Aoba 6-6-11, Sendai, Miyagi, 980-8579, Japan.
Natsuki TenmaGraduate School of Engineering, Tohoku University, Aza Aoba, Aramaki, Aoba 6-6-11, Sendai, Miyagi, 980-8579, Japan.
Yanbing LiGraduate School of Engineering, Tohoku University, Aza Aoba, Aramaki, Aoba 6-6-11, Sendai, Miyagi, 980-8579, Japan.
Naoto FujinoGraduate School of Engineering, Tohoku University, Aza Aoba, Aramaki, Aoba 6-6-11, Sendai, Miyagi, 980-8579, Japan.
Kaichi UnoGraduate School of Engineering, Tohoku University, Aza Aoba, Aramaki, Aoba 6-6-11, Sendai, Miyagi, 980-8579, Japan.
Satoshi YamashitaGraduate School of Natural Science and Technology, Kanazawa University, Kakuma, Kanazawa, 920-1192, Japan.
Yuichi AokiDepartment of Integrative Genomics, Tohoku Medical Megabank Organization, Seiryo 2-1, Sendai, Miyagi, 980-8573, Japan.
Konstantin DenessioukStructural Bioinformatics Laboratory, Biochemistry, Faculty of Science and Engineering, Åbo Akademi University, Turku, Finland.ORCID http://orcid.org/0000-0001-9758-9103
Yosuke KawaiGenome Medical Science Project, National Center for Global Health and Medicine, 1-21-1 Toyama Shinjuku-ku, Tokyo, 162-8655, Japan.
Satoko SugawaraThe RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, 230-0045, Japan.ORCID http://orcid.org/0000-0001-8647-065X
Kazuki SaitoThe RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, 230-0045, Japan.ORCID http://orcid.org/0000-0001-6310-5342
Keiko Yonekura-SakakibaraThe RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, 230-0045, Japan.ORCID http://orcid.org/0000-0002-0409-1523
Yasumasa MoritaExperimental Farm, Faculty of Agriculture, Meijo University, Kasugai, Aichi, 486-0804, Japan.
Atsushi HoshinoNational Institute for Basic Biology, Okazaki, Aichi, 444-8585, Japan.ORCID http://orcid.org/0000-0003-1926-5028
Seiji TakahashiGraduate School of Engineering, Tohoku University, Aza Aoba, Aramaki, Aoba 6-6-11, Sendai, Miyagi, 980-8579, Japan.ORCID http://orcid.org/0000-0002-2288-4340
Toru NakayamaGraduate School of Engineering, Tohoku University, Aza Aoba, Aramaki, Aoba 6-6-11, Sendai, Miyagi, 980-8579, Japan. toru.nakayama.e5@tohoku.ac.jp.ORCID http://orcid.org/0000-0002-5275-4731
Tohoku University · JPRIKEN Center for Sustainable Resource Science · JPÅbo Akademi University · FIKanazawa University · JPMeijo University · JPNational Center for Global Health and Medicine · JPNational Institute for Basic Biology · JPTohoku Medical Megabank Organization · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Land plants produce diverse flavonoids for growth, survival, and reproduction. Chalcone synthase is the first committed enzyme of the flavonoid biosynthetic pathway and catalyzes the production of 2',4,4',6'-tetrahydroxychalcone (THC). However, it also produces other polyketides, including p-coumaroyltriacetic acid lactone (CTAL), because of the derailment of the chalcone-producing pathway. This promiscuity of CHS catalysis adversely affects the efficiency of flavonoid biosynthesis, although it is also believed to have led to the evolution of stilbene synthase and p-coumaroyltriacetic acid synthase. In this study, we establish that chalcone isomerase-like proteins (CHILs), which are encoded by genes that are ubiquitous in land plant genomes, bind to CHS to enhance THC production and decrease CTAL formation, thereby rectifying the promiscuous CHS catalysis. This CHIL function has been confirmed in diverse land plant species, and represents a conserved strategy facilitating the efficient influx of substrates from the phenylpropanoid pathway to the flavonoid pathway.

Indexed as

AcyltransferasesArabidopsisBiocatalysisBiosynthetic PathwaysChalconesEmbryophytaEvolution, MolecularFlavonoidsGenes, PlantGenetic Complementation TestIntramolecular LyasesKineticsPlant ProteinsPlants, Genetically ModifiedPolyketidesSubstrate SpecificityAcyltransferaseschalcone isomeraseChalconesflavanone synthetaseFlavonoidsIntramolecular LyasesPlant ProteinsPolyketides

Identifiers

PMID32054839
PMCPMC7018950
OpenAlexW3006283477

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.