Evidence map›Paper›PMID 32054439›Full record

ArticleBMC plant biology2020

The TIR-NB-LRR pair DSC1 and WRKY19 contributes to basal immunity of Arabidopsis to the root-knot nematode Meloidogyne incognita.

Sonja Warmerdam, Mark G Sterken, Octavina C A Sukarta, Casper C van Schaik, Marian E P Oortwijn, Jose L Lozano-Torres, Jaap Bakker, Geert Smant, Aska Goverse

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Characterization ofFrontiers in plant science · 2022
    Article
  15. Article
  16. Transcription FactorPlants (Basel, Switzerland) · 2021
    Article
  17. Article
  18. Genome-wide association study for resistance to the Meloidogyne javanica causing root-knot nematode in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Sonja WarmerdamLaboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, 6708, PB, Wageningen, The Netherlands.
Mark G SterkenLaboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, 6708, PB, Wageningen, The Netherlands.
Octavina C A SukartaLaboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, 6708, PB, Wageningen, The Netherlands.
Casper C van SchaikLaboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, 6708, PB, Wageningen, The Netherlands.
Marian E P OortwijnLaboratory of Plant breeding, Wageningen University, Droevendaalsesteeg 1, 6708, PB, Wageningen, The Netherlands.
Jose L Lozano-TorresLaboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, 6708, PB, Wageningen, The Netherlands.
Jaap BakkerLaboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, 6708, PB, Wageningen, The Netherlands.
Geert SmantLaboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, 6708, PB, Wageningen, The Netherlands.
Aska GoverseLaboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, 6708, PB, Wageningen, The Netherlands. Aska.Goverse@wur.nl.ORCID http://orcid.org/0000-0002-7399-8743
Wageningen University & Research · NL

Funding

Nederlandse Organisatie voor Wetenschappelijk Onderzoek 10997
6 · The paper itself

Abstract

backgroundRoot-knot nematodes transform vascular host cells into permanent feeding structures to withdraw nutrients from the host plant. Ecotypes of Arabidopsis thaliana can display large quantitative variation in susceptibility to the root-knot nematode Meloidogyne incognita, which is thought to be independent of dominant major resistance genes. However, in an earlier genome-wide association study of the interaction between Arabidopsis and M. incognita we identified a quantitative trait locus harboring homologs of dominant resistance genes but with minor effect on susceptibility to the M. incognita population tested.

resultsHere, we report on the characterization of two of these genes encoding the TIR-NB-LRR immune receptor DSC1 (DOMINANT SUPPRESSOR OF Camta 3 NUMBER 1) and the TIR-NB-LRR-WRKY-MAPx protein WRKY19 in nematode-infected Arabidopsis roots. Nematode infection studies and whole transcriptome analyses using the Arabidopsis mutants showed that DSC1 and WRKY19 co-regulate susceptibility of Arabidopsis to M. incognita.

conclusionGiven the head-to-head orientation of DSC1 and WRKY19 in the Arabidopsis genome our data suggests that both genes may function as a TIR-NB-LRR immune receptor pair. Unlike other TIR-NB-LRR pairs involved in dominant disease resistance in plants, DSC1 and WRKY19 most likely regulate basal levels of immunity to root-knot nematodes.

Indexed as

AnimalsArabidopsisArabidopsis ProteinsGene Expression ProfilingGene Expression Regulation, PlantPlant DiseasesPlant ImmunityQuantitative Trait LociTylenchoideaArabidopsis ProteinsDSC1 protein, ArabidopsisArabidopsisDSC1Meloidogyne incognitaRoot-knot nematodesTIR-NB-LRR receptor pairWRKY19

Identifiers

PMID32054439
PMCPMC7020509
OpenAlexW3008994741

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.