Evidence map›Paper›PMID 32054310›Full record

ArticleBioTechniques2020

A rapid and simple bead-bashing-based method for genomic DNA extraction from mammalian tissue.

Shan Wei, Brynn Levy, Nataly Hoffman, Claudia Cujar, Reunet Rodney-Sandy, Ronald Wapner, Mary D'Alton, Zev Williams

Open access · goldAbstract read
In one paragraph

Article in BioTechniques, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Shan WeiDepartment of Obstetrics & Gynecology, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0003-3239-406X
Brynn LevyDepartment of Pathology & Cell Biology, Columbia University Medical Center, New York, NY 10032, USA.
Nataly HoffmanClinical Cytogenetics Laboratory, Columbia University Medical Center & the New York Presbyterian Hospital, New York, NY 10032, USA.
Claudia CujarDepartment of Pathology & Cell Biology, Columbia University Medical Center, New York, NY 10032, USA.
Reunet Rodney-SandyDepartment of Obstetrics & Gynecology, Columbia University Irving Medical Center, New York, NY 10032, USA.
Ronald WapnerDepartment of Obstetrics & Gynecology, Columbia University Irving Medical Center, New York, NY 10032, USA.
Mary D'AltonDepartment of Obstetrics & Gynecology, Columbia University Irving Medical Center, New York, NY 10032, USA.
Zev WilliamsDepartment of Obstetrics & Gynecology, Columbia University Irving Medical Center, New York, NY 10032, USA.
Columbia University Irving Medical Center · USNewYork–Presbyterian Hospital · US

Funding

ExRNA composition in SLE patients and factors influencing exRNP abundance and thU19CA179564 · NCI · ROCKEFELLER UNIVERSITY · PI TUSCHL, THOMAS · 2013 to 2017
$7.1M
Nanopore-based sequencing of placenta-cell-type-specific extracellular RNA for real time assessment of human placenta development and functionR01HD100013 · NICHD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI WILLIAMS, ZEV · 2019 to 2023
$3.4M
Transposons in Female Reproductive Health and DiseaseK08HD068546 · NICHD · ROCKEFELLER UNIVERSITY · PI WILLIAMS, ZEV · 2011 to 2014
$547k
NCI NIH HHS U19 CA179564NICHD NIH HHS K08 HD068546NICHD NIH HHS R01 HD100013
6 · The paper itself

Abstract

Conventional genomic DNA (gDNA) extraction methods can take hours to complete, may require fume hoods and represent the most time-consuming step in many gDNA-based molecular assays. We systematically optimized a bead bashing-based (BBB) approach for rapid gDNA extraction without the need for a fume hood. Human tissue specimens (n = 34) subjected to the 12-min BBB method yielded 0.40 ± 0.17 (mean ± SD) μg of gDNA per milligram of tissue, sufficient for many downstream applications, and 3- and 6-min extensions resulted in an additional 0.43 ± 0.23 μg and 0.48 ± 0.43 μg per milligram of tissue, respectively. The BBB method provides a simple and rapid method for gDNA extraction from mammalian tissue that is applicable to time-sensitive clinical applications.

Indexed as

Genetic TechniquesChorionic VilliDNAGenome, HumanHumansDNAgenetic testingrapid clinical diagnosticsrapid tissue gDNA extractiontissue processing

Identifiers

PMID32054310
PMCPMC7252492
OpenAlexW3005618915

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.