Evidence map›Paper›PMID 32053824›Full record

ArticlePediatric research2020

Transcriptome analysis reveals dysregulation of genes involved in oxidative phosphorylation in a murine model of retinopathy of prematurity.

Magdalena Zasada, Anna Madetko-Talowska, Cecilie Revhaug, Anne Gro W Rognlien, Lars O Baumbusch, Teofila Książek, Katarzyna Szewczyk, Agnieszka Grabowska, Miroslaw Bik-Multanowski, Jacek Józef Pietrzyk and 2 more

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Article in Pediatric research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Magdalena Zasada *Department of Paediatrics, Jagiellonian University Medical College, Krakow, Poland.
Anna Madetko-Talowska *Department of Medical Genetics, Jagiellonian University Medical College, Krakow, Poland.
Cecilie RevhaugDepartment of Paediatric Research, Oslo University Hospital Rikshospitalet, Oslo, Norway.
Anne Gro W RognlienDepartment of Paediatric Research, Oslo University Hospital Rikshospitalet, Oslo, Norway.
Lars O BaumbuschDepartment of Paediatric Research, Oslo University Hospital Rikshospitalet, Oslo, Norway.
Teofila KsiążekDepartment of Medical Genetics, Jagiellonian University Medical College, Krakow, Poland.
Katarzyna SzewczykDepartment of Medical Genetics, Jagiellonian University Medical College, Krakow, Poland.
Agnieszka GrabowskaDepartment of Medical Genetics, Jagiellonian University Medical College, Krakow, Poland.
Miroslaw Bik-MultanowskiDepartment of Medical Genetics, Jagiellonian University Medical College, Krakow, Poland.
Jacek Józef PietrzykDepartment of Paediatrics, Jagiellonian University Medical College, Krakow, Poland.
Przemko KwintaDepartment of Paediatrics, Jagiellonian University Medical College, Krakow, Poland. przemko.kwinta@uj.edu.pl.
Ola Didrik SaugstadDepartment of Paediatric Research, Oslo University Hospital Rikshospitalet, Oslo, Norway.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRetinal gene expression pattern is severely altered after exposition to hyperoxia in mice with oxygen-induced retinopathy (OIR), a common model of retinopathy of prematurity. Gene ontology and signaling pathway analyses may add new insights into a better understanding of the pathogenesis of this disease.

methodsSeven-day-old C57BL/6J mice (n = 60) were exposed to 75% oxygen for 5 days and then recovered in room air. The controls (n = 60) were kept in the normoxic conditions. Retinas were harvested immediately following hyperoxia, during the phase of maximal neovascularization, and at the time of neovascularization regression. The retinal RNA samples were evaluated for gene expression using mouse gene expression microarrays. DAVID annotation tools were used for gene ontology and pathway analyses.

resultsThe most significantly enriched signaling pathways during the neovascularization phase of OIR were: focal adhesion; ECM-receptor interaction; PI3K-Akt; oxidative phosphorylation; and Alzheimer's, Parkinson's and Huntington's disease signaling pathways. Genes involved in apoptosis, cell proliferation, cell differentiation, and immune responses were associated with neovascularization regression.

conclusionsPerformed analyses revealed the possible involvement of various signaling pathways in OIR pathomechanism, mostly specific to the OIR phase. Dysregulation of genes involved in oxidative phosphorylation may have an impact on neovascularization development.

Indexed as

Gene Expression RegulationOxidative PhosphorylationTranscriptomeAnimalsApoptosisCell DifferentiationCell ProliferationDisease Models, AnimalGene Expression ProfilingHyperoxiaHypoxiaImmune SystemMiceMice, Inbred C57BLMicrogliaNeovascularization, PathologicOxygenRNA

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.