Evidence map›Paper›PMID 32053707›Full record

ArticlePLoS pathogens2020

HIV protease cleaves the antiviral m6A reader protein YTHDF3 in the viral particle.

Denise Jurczyszak, Wen Zhang, Sandra N Terry, Thomas Kehrer, Maria C Bermúdez González, Emma McGregor, Lubbertus C F Mulder, Matthew J Eckwahl, Tao Pan, Viviana Simon

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 1 pooled it
3.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 1 synthesis or guideline pooled it, 56 citations in OpenAlex.

  1. Pooled it
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  11. Article
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  14. mFrontiers in cellular and infection microbiology · 2023
    Review
  15. Review
  16. The Role of RNA Modification in HIV-1 Infection.International journal of molecular sciences · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Denise JurczyszakThe Graduate School of Biomedical Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, United State of America.ORCID 0000-0003-4634-5672
Wen ZhangDepartment of Chemistry, The University of Chicago, Chicago, Illinois, United State of America.ORCID 0000-0001-8577-2613
Sandra N TerryDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, New York, United States of America.
Thomas KehrerDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, New York, United States of America.ORCID 0000-0002-6433-0098
Maria C Bermúdez GonzálezDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, New York, United States of America.
Emma McGregorThe Graduate School of Biomedical Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, United State of America.
Lubbertus C F MulderDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, New York, United States of America.
Matthew J EckwahlDepartment of Biochemistry and Molecular Biology, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois, United State of America.ORCID 0000-0002-3625-4016
Tao PanDepartment of Biochemistry and Molecular Biology, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois, United State of America.ORCID 0000-0003-1096-8405
Viviana SimonDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, New York, United States of America.ORCID 0000-0002-6416-5096
Icahn School of Medicine at Mount Sinai · USUniversity of Chicago · USThe Graduate Center, CUNY · US

Funding

MULTIDISCIPLINARY CARDIAC SCIENCEST32HL007381 · NHLBI · UNIVERSITY OF CHICAGO · PI JEANNE M DECARA, Yoav Gilad · 1985 to 2026
$12.5M
TRAINING PROGRAM: MECHANISMS OF VIRUS-HOST INTERACTIONST32AI007647 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI Domenico Tortorella · 2000 to 2026
$11.5M
Recognition and mechanism of N6-methyl adenosine modificationsR01GM113194 · NIGMS · UNIVERSITY OF CHICAGO · PI PAN, TAO · 2015 to 2022
$2.5M
HIV restriction by APOBEC3AR01AI120998 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SIMON, VIVIANA A · 2016 to 2020
$2.4M
Impact of HERV-K expression on HIV-1 life cycleR01GM113886 · NIGMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI MULDER, LUBBERTUS C · 2014 to 2018
$1.8M
Defining the role of pseudouridine modifications in HIV biologyR56AI141343 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI PAN, TAO, SIMON, VIVIANA A · 2019 to 2019
$679k
N6-methyladenosine and the biology of HIVR21AI125236 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI PAN, TAO, SIMON, VIVIANA A · 2016 to 2017
$464k
The Role of APOBEC3A in HIV RestrictionF31AI145557 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI MCGREGOR, EMMA LYNN · 2019 to 2020
$61k
NHLBI NIH HHS T32 HL007381NIAID NIH HHS F31 AI145557NIAID NIH HHS R01 AI120998NIAID NIH HHS R21 AI125236NIAID NIH HHS R56 AI141343NIAID NIH HHS T32 AI007647NIGMS NIH HHS R01 GM113194NIGMS NIH HHS R01 GM113886
6 · The paper itself

Abstract

N6-methyladenosine (m6A) is the most abundant HIV RNA modification but the interplay between the m6A reader protein YTHDF3 and HIV replication is not well understood. We found that knockout of YTHDF3 in human CD4+ T-cells increases infection supporting the role of YTHDF3 as a restriction factor. Overexpression of the YTHDF3 protein in the producer cells reduces the infectivity of the newly produced viruses. YTHDF3 proteins are incorporated into HIV particles in a nucleocapsid-dependent manner permitting the m6A reader protein to limit infection in the new target cell at the step of reverse transcription. Importantly, HIV protease cleaves the virion-incorporated full-length YTHDF3 protein, a process which is blocked by HIV protease inhibitors used to treat HIV infected patients. Mass-spectrometry confirmed the proteolytic processing of YTHDF3 in the virion. Thus, HIV protease cleaves the virion-encapsidated host m6A effector protein in addition to the viral polyproteins to ensure optimal infectivity of the mature virion.

Indexed as

AdenosineAntiviral AgentsCD4-Positive T-LymphocytesHEK293 CellsHIV-1HIV InfectionsHIV ProteaseHumansPrimary Cell CultureRNA-Binding ProteinsVirionAdenosineAntiviral AgentsHIV ProteaseN-methyladenosineRNA-Binding ProteinsYTHDF3 protein, human

Identifiers

PMID32053707
PMCPMC7043784
OpenAlexW3006378979

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.