Evidence map›Paper›PMID 32050838›Full record

ArticleRNA biology2020

Auxiliary domains of the HrpB bacterial DExH-box helicase shape its RNA preferences.

Stéphane Hausmann, Johan Geiser, Oscar Vadas, Verena Ducret, Karl Perron, Martina Valentini

Open access · bronzeAbstract read
In one paragraph

Article in RNA biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Mapping of RNA Helicase Dynamics by HDX-MS.Methods in molecular biology (Clifton, N.J.) · 2027
    Article
  2. Article
  3. Article
  4. Large-scale ratcheting in a bacterial DEAH/RHA-type RNA helicase that modulates antibiotics susceptibility.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Stéphane HausmannDepartment of Microbiology and Molecular Medicine, CMU, Faculty of Medicine, University of Geneva, Geneva, Switzerland.
Johan GeiserDepartment of Microbiology and Molecular Medicine, CMU, Faculty of Medicine, University of Geneva, Geneva, Switzerland.ORCID 0000-0003-0046-1723
Oscar VadasDepartment of Microbiology and Molecular Medicine, CMU, Faculty of Medicine, University of Geneva, Geneva, Switzerland.ORCID 0000-0003-3511-6479
Verena DucretMicrobiology Unit, Department of Botany and Plant Biology, University of Geneva, Geneva, Switzerland.
Karl PerronMicrobiology Unit, Department of Botany and Plant Biology, University of Geneva, Geneva, Switzerland.
Martina ValentiniDepartment of Microbiology and Molecular Medicine, CMU, Faculty of Medicine, University of Geneva, Geneva, Switzerland.ORCID 0000-0002-1948-8339
University of Geneva · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RNA helicases are fundamental players in RNA metabolism: they remodel RNA secondary structures and arrange ribonucleoprotein complexes. While DExH-box RNA helicases function in ribosome biogenesis and splicing in eukaryotes, information is scarce about bacterial homologs. HrpB is the only bacterial DExH-box protein whose structure is solved. Besides the catalytic core, HrpB possesses three accessory domains, conserved in all DExH-box helicases, plus a unique C-terminal extension (CTE). The function of these auxiliary domains remains unknown. Here, we characterize genetically and biochemically

Indexed as

Adenosine TriphosphatasesAmino Acid SequenceBacterial ProteinsBinding SitesDEAD-box RNA HelicasesModels, MolecularMutationPhenotypeProtein BindingProtein ConformationProtein Interaction Domains and MotifsPseudomonas aeruginosaRNASequence DeletionStructure-Activity RelationshipAdenosine TriphosphatasesBacterial ProteinsDEAD-box RNA HelicasesRNAATPaseDExH-boxHDX-MSPseudomonas aeruginosaRNA-binding proteinsRNA helicase

Identifiers

PMID32050838
PMCPMC7237152
OpenAlexW3006424140

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.