Evidence map›Paper›PMID 32048621›Full record

ArticleThe Indian journal of medical research2019

Promoter-associated DNA methylation & expression profiling of genes (

Shngainlang Khongsti, Brian Neizekhotuo Shunyu, Srimoyee Ghosh

Open access · diamondAbstract read
In one paragraph

Article in The Indian journal of medical research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Role ofPathophysiology : the official journal of the International Society for Pathophysiology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Shngainlang KhongstiDepartment of Zoology, North Eastern Hill University, Shillong, Meghalaya, India.
Brian Neizekhotuo ShunyuDepartment of Otorhinolaryngology, North East Indira Gandhi Regional Institute for Health & Medical Sciences, Shillong, Meghalaya, India.
Srimoyee GhoshDepartment of Zoology, North Eastern Hill University, Shillong, Meghalaya, India.
North Eastern Hill University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background & objectives: Oral squamous cell carcinoma is one of the most lethal forms of cancer, and its aetiology has been attributed to both genetic and epigenetic factors working in liaison to contribute to the disease. Epigenetic changes especially DNA methylation is involved in the activation or repression of gene functions. The aim of this study was to investigate the DNA methylation pattern and expression profiling of the promoter regions of FMS-related tyrosine kinase 3 (FLT3), erythrocyte membrane protein band 4.1-like 3 (EPB41L3) and stratifin (SFN) genes in oral cancer within the Khasi and Jaintia tribal population of Meghalaya in North East India. Methods: Quantitative methylation analyses of the selected genes were carried out by MassARRAY platform System, and the relative expression profiling was carried out by real-time polymerase chain reaction. Results: Quantitative methylation results indicated that the level of methylation was significantly higher (hypermethylated) for FLT3 and EPB41L3 and significantly lower (hypomethylated) for SFN in tumour tissues as compared to the adjacent paired normal tissue. Expression profiling was in concurrence with the methylation data whereby hypermethylated genes showed low mRNA level and vice versa for the hypomethylated gene. Interpretation & conclusions: The findings show that hyper- and hypomethylation of the selected genes play a potential role in oral carcinogenesis in the selected Khasi and Jaintia tribal population of Meghalaya. The methylation status of these genes has not been reported in oral cancer, so these genes may serve as promising biomarkers for oral cancer diagnosis as well as in disease monitoring.

Indexed as

14-3-3 ProteinsAdultBiomarkers, TumorCarcinoma, Squamous CellDNA MethylationExoribonucleasesFemalefms-Like Tyrosine Kinase 3Gene Expression Regulation, NeoplasticHumansIndiaMaleMicrofilament ProteinsMiddle AgedMouth NeoplasmsPromoter Regions, Genetic14-3-3 ProteinsBiomarkers, TumorEPB41L3 protein, humanExoribonucleasesFLT3 protein, humanfms-Like Tyrosine Kinase 3Microfilament ProteinsSFN protein, humanDNA methylationethnic populationgene expressionhypermethylationhypomethylationoral cancer

Identifiers

PMID32048621
PMCPMC7038811
OpenAlexW3003684286

What OpenQuestion holds

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LicenceCC BY-NC-SA
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.