Evidence map›Paper›PMID 32048044›Full record

ArticleJournal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry2020

Distinctive structural properties of THB11, a pentacoordinate Chlamydomonas reinhardtii truncated hemoglobin with N- and C-terminal extensions.

Dennis Huwald, Sabrina Duda, Raphael Gasper, Vincent Olieric, Eckhard Hofmann, Anja Hemschemeier

Open access · hybridAbstract read
In one paragraph

Article in Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.3field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 5 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 3 countries.

Dennis HuwaldFaculty of Biology and Biotechnology, Photobiotechnology, Ruhr University Bochum, Universitätsstr. 150, 44801, Bochum, Germany.
Sabrina DudaFaculty of Biology and Biotechnology, Photobiotechnology, Ruhr University Bochum, Universitätsstr. 150, 44801, Bochum, Germany.
Raphael GasperFaculty of Biology and Biotechnology, Protein Crystallography, Ruhr University Bochum, Universitätsstr. 150, 44801, Bochum, Germany.ORCID https://orcid.org/0000-0002-7780-0773
Vincent OliericSwiss Light Source (SLS), Paul-Scherrer-Institute (PSI), 5232, Villigen, Switzerland.ORCID http://orcid.org/0000-0002-0533-7222
Eckhard HofmannFaculty of Biology and Biotechnology, Protein Crystallography, Ruhr University Bochum, Universitätsstr. 150, 44801, Bochum, Germany. eckhard.hofmann@rub.de.ORCID http://orcid.org/0000-0003-4874-372X
Anja HemschemeierFaculty of Biology and Biotechnology, Photobiotechnology, Ruhr University Bochum, Universitätsstr. 150, 44801, Bochum, Germany. anja.hemschemeier@rub.de.ORCID http://orcid.org/0000-0001-8879-3348
Ruhr University Bochum · DECharles River Laboratories (Germany) · DEMax Planck Institute of Molecular Physiology · DEPaul Scherrer Institute · CHUniversity Hospitals of the Ruhr-University of Bochum · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hemoglobins (Hbs) utilize heme b as a cofactor and are found in all kingdoms of life. The current knowledge reveals an enormous variability of Hb primary sequences, resulting in topological, biochemical and physiological individuality. As Hbs appear to modulate their reactivities through specific combinations of structural features, predicting the characteristics of a given Hb is still hardly possible. The unicellular green alga Chlamydomonas reinhardtii contains 12 genes encoding diverse Hbs of the truncated lineage, several of which possess extended N- or C-termini of unknown function. Studies on some of the Chlamydomonas Hbs revealed yet unpredictable structural and biochemical variations, which, along with a different expression of their genes, suggest diverse physiological roles. Chlamydomonas thus represents a promising system to analyze the diversification of Hb structure, biochemistry and physiology. Here, we report the crystal structure, resolved to 1.75 Å, of the heme-binding domain of cyanomet THB11 (Cre16.g662750), one of the pentacoordinate algal Hbs, which offer a free Fe-coordination site in the reduced state. The overall fold of THB11 is conserved, but individual features such as a kink in helix E, a tilted heme plane and a clustering of methionine residues at a putative tunnel exit appear to be unique. Both N- and C-termini promote the formation of oligomer mixtures, and the absence of the C terminus results in reduced nitrite reduction rates. This work widens the structural and biochemical knowledge on the 2/2Hb family and suggests that the N- and C-terminal extensions of the Chlamydomonas 2/2Hbs modulate their reactivity by intermolecular interactions.

Indexed as

Chlamydomonas reinhardtiiHemoglobinsModels, MolecularProtein ConformationHemoglobinsLigand tunnelsNitrite reductionOligomerizationPentacoordinationTruncated hemoglobin

Identifiers

PMID32048044
PMCPMC7082302
OpenAlexW3006566815

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.