Evidence map›Paper›PMID 32047164›Full record

ArticleNature communications2020

Atomic structures of anthrax toxin protective antigen channels bound to partially unfolded lethal and edema factors.

Nathan J Hardenbrook, Shiheng Liu, Kang Zhou, Koyel Ghosal, Z Hong Zhou, Bryan A Krantz

Abstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Step-by-step maturation mechanism of the binary toxin pore revealed by cryo-EM analysis.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  18. Recombinant full-lengthFrontiers in immunology · 2022
    Article
  19. Article
  20. Native structure of the RhopH complex, a key determinant of malaria parasite nutrient acquisition.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Nathan J Hardenbrook *Department of Microbial Pathogenesis, University of Maryland, Baltimore, Baltimore, MD, 21201, USA.ORCID http://orcid.org/0000-0003-1539-6768
Shiheng Liu *Department of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, CA, 90095, USA.ORCID http://orcid.org/0000-0002-0561-1981
Kang Zhou *Department of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, CA, 90095, USA.ORCID http://orcid.org/0000-0002-3034-2808
Koyel GhosalDepartment of Microbial Pathogenesis, University of Maryland, Baltimore, Baltimore, MD, 21201, USA.ORCID http://orcid.org/0000-0002-2344-9631
Z Hong ZhouDepartment of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, CA, 90095, USA. Hong.Zhou@UCLA.edu.ORCID http://orcid.org/0000-0002-8373-4717
Bryan A KrantzDepartment of Microbial Pathogenesis, University of Maryland, Baltimore, Baltimore, MD, 21201, USA. bkrantz@umaryland.edu.ORCID http://orcid.org/0000-0002-4911-5824

Funding

Genome Structure, Transcription and Packaging of dsRNA VirusesR01AI094386 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Z Hong ZHOU · 2012 to 2026
$6.0M
High-Resolution CryoEM Reconstruction of Large ComplexesR01GM071940 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ZHOU, Z HONG · 2006 to 2025
$5.0M
TRAINING PROGRAM IN INTEGRATIVE MEMBRANE BIOLOGYT32GM008181 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE · PI RIZZO, MEGAN A, TRUDEAU, MATTHEW C · 1987 to 2022
$4.9M
In situ atomic structures of the Kaposi's sarcoma-associated herpesvirus portal-terminase complex and glycoproteinsR01DE025567 · NIDCR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WU, TING-TING, ZHOU, Z HONG · 2016 to 2024
$4.0M
Physical Principles of Bacterial Toxin Translocation across MembranesR01AI077703 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI KRANTZ, BRYAN ANDREW · 2008 to 2017
$3.3M
West/Midwest Consortium for High-Resolution Cryo Electron MicroscopyU24GM116792 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI AGBANDJE-MCKENNA, MAVIS, DOKLAND, TERJE · 2016 to 2020
$3.0M
HIGH-END CRYOEM INSTRUMENT FOR UCLA ELECTRON IMAGING CTR FOR NANOMACHINES: AIDSS10RR023057 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZHOU, Z HONG · 2006 to 2006
$1.6M
Direct Detection Device for atomic resolution cryoEM of macromolecular complexesS10OD018111 · OD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZHOU, Z HONG · 2014 to 2014
$598k
Molecular analyses of toxin nanopore structural dynamicsR21AI124020 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI GOODLETT, DAVID ROBINSON, KRANTZ, BRYAN ANDREW · 2016 to 2017
$437k
NCRR NIH HHS S10 RR023057NIAID NIH HHS R01 AI077703NIAID NIH HHS R01 AI094386NIAID NIH HHS R21 AI124020NIDCR NIH HHS R01 DE025567NIGMS NIH HHS R01 GM071940NIGMS NIH HHS T32 GM008181NIGMS NIH HHS U24 GM116792NIH HHS S10 OD018111
6 · The paper itself

Abstract

Following assembly, the anthrax protective antigen (PA) forms an oligomeric translocon that unfolds and translocates either its lethal factor (LF) or edema factor (EF) into the host cell. Here, we report the cryo-EM structures of heptameric PA channels with partially unfolded LF and EF at 4.6 and 3.1-Å resolution, respectively. The first α helix and β strand of LF and EF unfold and dock into a deep amphipathic cleft, called the α clamp, which resides at the interface of two PA monomers. The α-clamp-helix interactions exhibit structural plasticity when comparing the structures of lethal and edema toxins. EF undergoes a largescale conformational rearrangement when forming the complex with the channel. A critical loop in the PA binding interface is displaced for about 4 Å, leading to the weakening of the binding interface prior to translocation. These structures provide key insights into the molecular mechanisms of translocation-coupled protein unfolding and translocation.

Indexed as

Protein UnfoldingAmino Acid SequenceAntigens, BacterialBacillus anthracisBacterial ToxinsBinding SitesCryoelectron MicroscopyCrystallography, X-RayModels, MolecularProtein BindingProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein Interaction Domains and Motifsanthrax toxinAntigens, BacterialBacterial Toxins

Identifiers

PMID32047164
PMCPMC7012834

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.