ArticleScientific data2020
Genome-wide gene expression profiling of the melon fly, Zeugodacus cucurbitae, during thirteen life stages.
Article in Scientific data, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed.
- Molting in Pancrustacea Is Characterized by Both Deeply Conserved and Recently Evolved Gene Modules.Genome biology and evolution · 2026Article
- Characteristics of the Insulin-like Peptide Genes and Their Roles in the Ovarian Development ofInsects · 2025Article
- CRISPR/Cas9-Mediated Knockout ofInsects · 2025Article
- Divergent Heat Stress Responses inInsects · 2024Article
- Comparative Transcriptome Analysis ofInternational journal of molecular sciences · 2024Article
- Recapitulation of the embryonic transcriptional program in holometabolous insect pupae.Scientific reports · 2022Article
- Vitelline Membrane Protein 26 Mutagenesis, Using CRISPR/Cas9, Results in Egg Collapse inInternational journal of molecular sciences · 2022Article
- Expression and Role ofInsects · 2022Article
- Identification and Expression Characterization of ATP-Binding Cassette (ABC) Transporter Genes in Melon Fly.Insects · 2021Article
- Genome-wide analysis of long non-coding RNAs in adult tissues of the melon fly, Zeugodacus cucurbitae (Coquillett).BMC genomics · 2020Article
- Genome-wide gene expression profiling of the melon fly, Zeugodacus cucurbitae, during thirteen life stages.Scientific data · 2020Article
- The PacBio Full-Length Transcriptome of the Tea Aphid as a Reference Resource.Frontiers in genetics · 2020Article
- Transcriptomic Profiling of Various Developmental Stages ofFrontiers in physiology · 2020Article
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The melon fly, Zeugodacus cucurbitae (Coquillett), is an important destructive pest worldwide. Functional studies of the genes associated with development and reproduction during different life stages are limited in Z. cucurbitae. There have yet to be comprehensive transcriptomic resources for genetic and functional genomic studies to identify the molecular mechanisms related to its development and reproduction. In this study, we comprehensively sequenced the transcriptomes of four different developmental stages: egg, larva, pupa, and adults. Using the Illumina RNA-Seq technology, we constructed 52 libraries from 13 stages with four biological replicates in each and generated 435.61 Gb clean reads. We comprehensively characterized the transcriptomes with high-coverage mapping to the reference genome. A total of 13,760 genes were mapped to the reference genome, and another 4481 genes were characterized as new genes. Finally, 14,931 genes (81.85%) were functionally annotated against six annotation databases. This study provides the first comprehensive transcriptome data of all developmental stages of Z. cucurbitae, and will serve as a valuable resource for future genetic and functional studies.
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