Evidence map›Paper›PMID 32045407›Full record

ArticlePLoS biology2020

Combining genomics and epidemiology to track mumps virus transmission in the United States.

Shirlee Wohl, Hayden C Metsky, Stephen F Schaffner, Anne Piantadosi, Meagan Burns, Joseph A Lewnard, Bridget Chak, Lydia A Krasilnikova, Katherine J Siddle, Christian B Matranga and 20 more

Abstract read
In one paragraph

Article in PLoS biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Establishing methods to monitor H5N1 influenza virus in dairy cattle milk.medRxiv : the preprint server for health sciences · 2024
    Article
  6. Article
  7. Modeling the population-level impact of a third dose of MMR vaccine on a mumps outbreak at the University of Iowa.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Article
  9. Epidemiologic and clinical updates on viral infections in Saudi Arabia.Saudi pharmaceutical journal : SPJ : the official publication of the Saudi Pharmaceutical Society · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Disentangling the causes of mumps reemergence in the United States.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Containing the spread of mumps on college campuses.Royal Society open science · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors.

Shirlee WohlBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-0311-3348
Hayden C MetskyBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-8871-2349
Stephen F SchaffnerBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.ORCID 0000-0001-6699-3568
Anne PiantadosiBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Meagan BurnsMassachusetts Department of Public Health, Jamaica Plain, Massachusetts, United States of America.ORCID 0000-0001-7802-4721
Joseph A LewnardDivision of Epidemiology and Biostatistics, School of Public Health, University of California, Berkeley, Berkeley, California, United States of America.
Bridget ChakBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Lydia A KrasilnikovaBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.ORCID 0000-0003-4163-706X
Katherine J SiddleBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-1799-7295
Christian B MatrangaBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Bettina BankampDivision of Viral Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America.ORCID 0000-0002-0846-3320
Scott HenniganMassachusetts Department of Public Health, Jamaica Plain, Massachusetts, United States of America.ORCID 0000-0001-8898-8022
Brandon SabinaMassachusetts Department of Public Health, Jamaica Plain, Massachusetts, United States of America.
Elizabeth H ByrneBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-4576-8772
Rebecca J McNallDivision of Viral Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America.
Rickey R ShahBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-3231-0367
James QuBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Daniel J ParkBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.ORCID 0000-0001-7226-7781
Soheyla GharibHarvard University Health Services, Harvard University, Cambridge, Massachusetts, United States of America.
Susan FitzgeraldHarvard University Health Services, Harvard University, Cambridge, Massachusetts, United States of America.
Paul BarreiraHarvard University Health Services, Harvard University, Cambridge, Massachusetts, United States of America.ORCID 0000-0001-6608-3193
Stephen FlemingMassachusetts Department of Public Health, Jamaica Plain, Massachusetts, United States of America.
Susan LettMassachusetts Department of Public Health, Jamaica Plain, Massachusetts, United States of America.
Paul A RotaDivision of Viral Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America.ORCID 0000-0002-8595-4094
Lawrence C MadoffMassachusetts Department of Public Health, Jamaica Plain, Massachusetts, United States of America.ORCID 0000-0003-2589-7777
Nathan L YozwiakBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-0138-7556
Bronwyn L MacInnisBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Sandra SmoleMassachusetts Department of Public Health, Jamaica Plain, Massachusetts, United States of America.ORCID 0000-0001-9414-8521
Yonatan H GradDepartment of Immunology and Infectious Diseases, Harvard TH Chan School of Public Health, Boston, Massachusetts, United States of America.ORCID 0000-0001-5646-1314
Pardis C SabetiBroad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-9843-1890

Funding

Viral Genomics: evolution, spread, and host interactionsU19AI110818 · NIAID · BROAD INSTITUTE, INC. · PI SABETI, PARDIS CHRISTINE · 2014 to 2024
$66.5M
Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
Understanding and controlling antibiotic resistanceU54GM088558 · NIGMS · HARVARD SCHOOL OF PUBLIC HEALTH · PI LIPSITCH, MARC · 2009 to 2018
$26.4M
INFECTIOUS DISEASE AND BASIC MICROBIOLOGICAL MECHANISMST32AI007061 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI Marcia B Goldberg · 1985 to 2026
$12.1M
Epidemiology of Infectious Diseases and BiodefenseT32AI007535 · NIAID · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI GRAD, YONATAN H, MURRAY, MEGAN B · 1998 to 2025
$4.8M
Howard Hughes Medical InstituteNIAID NIH HHS T32 AI007061NIAID NIH HHS T32 AI007535NIAID NIH HHS U19 AI110818NIGMS NIH HHS T32 GM007753NIGMS NIH HHS U54 GM088558
6 · The paper itself

Abstract

Unusually large outbreaks of mumps across the United States in 2016 and 2017 raised questions about the extent of mumps circulation and the relationship between these and prior outbreaks. We paired epidemiological data from public health investigations with analysis of mumps virus whole genome sequences from 201 infected individuals, focusing on Massachusetts university communities. Our analysis suggests continuous, undetected circulation of mumps locally and nationally, including multiple independent introductions into Massachusetts and into individual communities. Despite the presence of these multiple mumps virus lineages, the genomic data show that one lineage has dominated in the US since at least 2006. Widespread transmission was surprising given high vaccination rates, but we found no genetic evidence that variants arising during this outbreak contributed to vaccine escape. Viral genomic data allowed us to reconstruct mumps transmission links not evident from epidemiological data or standard single-gene surveillance efforts and also revealed connections between apparently unrelated mumps outbreaks.

Indexed as

Disease OutbreaksGenome, ViralGenotypeHumansMolecular EpidemiologyMumpsMumps virusMutationPhylogenySequence Analysis, DNAUnited StatesVaccinationViral ProteinsViral Proteins

Identifiers

PMID32045407
PMCPMC7012397

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.