Evidence map›Paper›PMID 32045111›Full record

ArticleMicrobial biotechnology2020

An expanded CRISPRi toolbox for tunable control of gene expression in Pseudomonas putida.

Christos Batianis, Ekaterina Kozaeva, Stamatios G Damalas, María Martín-Pascual, Daniel C Volke, Pablo I Nikel, Vitor A P Martins Dos Santos

Abstract read
In one paragraph

Article in Microbial biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

  1. Article
  2. Article
  3. Multi-layered metabolic remodeling ofMetabolic engineering communications · 2026
    Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. Leveraging EngineeredACS synthetic biology · 2025
    Article
  10. Genomic engineering inFrontiers in microbiology · 2025
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. GenoMine: a CRISPR-Cas9-based kill switch for biocontainment ofFrontiers in bioengineering and biotechnology · 2024
    Article
  20. Does regulation hold the key to optimizing lipopeptide production inFrontiers in bioengineering and biotechnology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Christos BatianisLaboratory of Systems and Synthetic Biology, Wageningen & Research University, 6708, Wageningen, The Netherlands.ORCID 0000-0002-2248-4523
Ekaterina KozaevaThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800, Kgs. Lyngby, Denmark.ORCID 0000-0001-9370-6157
Stamatios G DamalasLaboratory of Systems and Synthetic Biology, Wageningen & Research University, 6708, Wageningen, The Netherlands.ORCID 0000-0001-8320-2924
María Martín-PascualLaboratory of Systems and Synthetic Biology, Wageningen & Research University, 6708, Wageningen, The Netherlands.
Daniel C VolkeThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800, Kgs. Lyngby, Denmark.ORCID 0000-0003-0244-2534
Pablo I NikelThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800, Kgs. Lyngby, Denmark.ORCID 0000-0002-9313-7481
Vitor A P Martins Dos SantosLaboratory of Systems and Synthetic Biology, Wageningen & Research University, 6708, Wageningen, The Netherlands.ORCID 0000-0002-2352-9017

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Owing to its wide metabolic versatility and physiological robustness, together with amenability to genetic manipulations and high resistance to stressful conditions, Pseudomonas putida is increasingly becoming the organism of choice for a range of applications in both industrial and environmental applications. However, a range of applied synthetic biology and metabolic engineering approaches are still limited by the lack of specific genetic tools to effectively and efficiently regulate the expression of target genes. Here, we present a single-plasmid CRISPR-interference (CRISPRi) system expressing a nuclease-deficient cas9 gene under the control of the inducible XylS/P

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsPseudomonas putidaCRISPR-Cas SystemsGene ExpressionRNA, Guide, CRISPR-Cas SystemsRNA, Guide, CRISPR-Cas Systems

Identifiers

PMID32045111
PMCPMC7017828

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.