Evidence map›Paper›PMID 32044654›Full record

ReviewCurrent opinion in microbiology2020

The evolution of MarR family transcription factors as counter-silencers in regulatory networks.

William Ryan Will, Ferric C Fang

Abstract readReview
In one paragraph

Review in Current opinion in microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Effect of NaCl stress on exoproteome profiles ofFrontiers in microbiology · 2023
    Article
  11. Article
  12. Article
  13. Review
  14. The MarR-Type Regulator PA3458 Is Involved in Osmoadaptation Control inInternational journal of molecular sciences · 2021
    Article
  15. Regulation ofMicroorganisms · 2021
    Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

William Ryan WillDepartment of Laboratory Medicine, University of Washington School of Medicine, Seattle, WA, 98195, USA.
Ferric C FangDepartment of Laboratory Medicine, University of Washington School of Medicine, Seattle, WA, 98195, USA; Department of Microbiology, University of Washington School of Medicine, Seattle, WA, 98195, USA. Electronic address: fcfang@u.washington.edu.

Funding

THE SALMONELLA TYPHIMURIUM SIGMAE REGULONR01AI044486 · NIAID · UNIVERSITY OF WASHINGTON · PI FANG, FERRIC C · 1999 to 2016
$4.9M
NITRIC OXIDE CYTOTOXICITY IN SALMONELLOSISR01AI039557 · NIAID · UNIVERSITY OF WASHINGTON · PI FANG, FERRIC C · 1997 to 2012
$4.1M
Coordinate Regulation of Salmonella Virulence and Antimicrobial Resistance by MarR Transcription FactorsR01AI150041 · NIAID · UNIVERSITY OF WASHINGTON · PI FANG, FERRIC C · 2020 to 2024
$2.5M
Typhoid Pathogenesis and ImmunityR01AI112640 · NIAID · UNIVERSITY OF WASHINGTON · PI FANG, FERRIC C · 2015 to 2019
$2.1M
Antimicrobial Actions of Nitric OxideR01AI118962 · NIAID · UNIVERSITY OF WASHINGTON · PI FANG, FERRIC C · 2016 to 2020
$1.9M
Typhoid Pathogenesis and ImmunityR56AI112640 · NIAID · UNIVERSITY OF WASHINGTON · PI FANG, FERRIC C · 2020 to 2020
$574k
NIAID NIH HHS R01 AI039557NIAID NIH HHS R01 AI044486NIAID NIH HHS R01 AI112640NIAID NIH HHS R01 AI118962NIAID NIH HHS R01 AI150041NIAID NIH HHS R56 AI112640
6 · The paper itself

Abstract

Gene duplication facilitates the evolution of biological complexity, as one copy of a gene retains its original function while a duplicate copy can acquire mutations that would otherwise diminish fitness. Duplication has played a particularly important role in the evolution of regulatory networks by permitting novel regulatory interactions and responses to stimuli. The diverse MarR family of transcription factors (MFTFs) illustrate this concept, ranging from highly specific repressors of single operons to pleiotropic global regulators controlling hundreds of genes. MFTFs are often genetically and functionally linked to antimicrobial efflux systems. However, the SlyA MFTF lineage in the Enterobacteriaceae plays little or no role in regulating efflux but rather functions as transcriptional counter-silencers, which alleviate xenogeneic silencing of horizontally acquired genes and facilitate bacterial evolution by horizontal gene transfer. This review will explore recent advances in our understanding of MFTF traits that have contributed to their functional evolution.

Indexed as

Multigene FamilyBacteriaBacterial ProteinsDNA-Binding ProteinsDrug Resistance, Multiple, BacterialEscherichia coli ProteinsEvolution, MolecularGene Expression Regulation, BacterialRepressor ProteinsTranscription FactorsBacterial ProteinsDNA-Binding ProteinsEscherichia coli ProteinsMarR protein, E coliRepressor ProteinsTranscription Factors

Identifiers

PMID32044654
PMCPMC7311280

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.