Evidence map›Paper›PMID 32042379›Full record

ArticleComputational and structural biotechnology journal2020

Computational saturation mutagenesis to predict structural consequences of systematic mutations in the beta subunit of RNA polymerase in

Sundeep Chaitanya Vedithi, Carlos H M Rodrigues, Stephanie Portelli, Marcin J Skwark, Madhusmita Das, David B Ascher, Tom L Blundell, Sony Malhotra

Open access · goldAbstract read
In one paragraph

Article in Computational and structural biotechnology journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 30 citations in OpenAlex.

  1. AI-Driven Enhancements in Drug Screening and Optimization.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  2. Article
  3. Review
  4. Using Graph-Based Signatures to Guide Rational Antibody Engineering.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. The Structural Basis ofMolecules (Basel, Switzerland) · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Distinguishing between PTEN clinical phenotypes through mutation analysis.Computational and structural biotechnology journal · 2021
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Combining structure and genomics to understand antimicrobial resistance.Computational and structural biotechnology journal · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Sundeep Chaitanya VedithiDepartment of Biochemistry, University of Cambridge, Tennis Court Rd., CB2 1GA, UK.
Carlos H M RodriguesDepartment of Biochemistry and Molecular Biology, Bio21 Institute, University of Melbourne, Parkville, VIC 3052, Australia.
Stephanie PortelliDepartment of Biochemistry and Molecular Biology, Bio21 Institute, University of Melbourne, Parkville, VIC 3052, Australia.
Marcin J SkwarkDepartment of Biochemistry, University of Cambridge, Tennis Court Rd., CB2 1GA, UK.
Madhusmita DasMolecular Biology Laboratory, Schieffelin Institute of Heath-Research and Leprosy Center, Karigiri, Vellore, Tamil Nadu 632106, India.
David B AscherDepartment of Biochemistry, University of Cambridge, Tennis Court Rd., CB2 1GA, UK.
Tom L BlundellDepartment of Biochemistry, University of Cambridge, Tennis Court Rd., CB2 1GA, UK.
Sony MalhotraDepartment of Biochemistry, University of Cambridge, Tennis Court Rd., CB2 1GA, UK.
University of Cambridge · GBBaker Heart and Diabetes Institute · AUSchieffelin Institute of Health Research and Leprosy Centre · IN

Funding

Medical Research Council MR/M026302/1Wellcome Trust
6 · The paper itself

Abstract

Rifampin resistance in leprosy may remain undetected due to the lack of rapid and effective diagnostic tools. A quick and reliable method is essential to determine the impacts of emerging detrimental mutations in the drug targets. The functional consequences of missense mutations in the β-subunit of RNA polymerase (RNAP) in AUTHOR SUMMARY: The emergence of primary and secondary drug resistance to rifampin in leprosy is a growing concern and poses a threat to the leprosy control and elimination measures globally. In the absence of an effective

Indexed as

In-silico Saturation MutagenesisMutation CoolspotsMycobacterium lepraeRifampinRNA PolymeraseThermodynamic stability

Identifiers

PMID32042379
PMCPMC7000446
OpenAlexW2999447007

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.