Evidence map›Paper›PMID 32042209›Full record

ArticlePattern recognition2019

Three-Dimensional Krawtchouk Descriptors for Protein Local Surface Shape Comparison.

Atilla Sit, Woong-Hee Shin, Daisuke Kihara

Abstract read
In one paragraph

Article in Pattern recognition, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. 2DKD: a toolkit for content-based local image search.Source code for biology and medicine · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Atilla SitDepartment of Mathematics and Statistics, Eastern Kentucky University, Richmond, KY, 40475 USA.
Woong-Hee ShinDepartment of Biological Sciences, Purdue University, West Lafayette, IN, 47907 USA.
Daisuke KiharaDepartment of Biological Sciences, Purdue University, West Lafayette, IN, 47907 USA.

Funding

Structural Modeling of Multifarious Protein ComplexesR01GM123055 · NIGMS · PURDUE UNIVERSITY · PI KIHARA, DAISUKE · 2017 to 2020
$1.2M
NIGMS NIH HHS R01 GM123055
6 · The paper itself

Abstract

Direct comparison of three-dimensional (3D) objects is computationally expensive due to the need for translation, rotation, and scaling of the objects to evaluate their similarity. In applications of 3D object comparison, often identifying specific local regions of objects is of particular interest. We have recently developed a set of 2D moment invariants based on discrete orthogonal Krawtchouk polynomials for comparison of local image patches. In this work, we extend them to 3D and construct 3D Krawtchouk descriptors (3DKDs) that are invariant under translation, rotation, and scaling. The new descriptors have the ability to extract local features of a 3D surface from any region-of-interest. This property enables comparison of two arbitrary local surface regions from different 3D objects. We present the new formulation of 3DKDs and apply it to the local shape comparison of protein surfaces in order to predict ligand molecules that bind to query proteins.

Indexed as

3D image retrieval3D Krawtchouk momentsdiscrete orthogonal functionsKrawtchouk polynomialsligand binding sitelocal image comparisonpocket comparisonprotein surfaceregion of intereststructure-based function predictionweighted Krawtchouk polynomials

Identifiers

PMID32042209
PMCPMC7009784

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.