Evidence map›Paper›PMID 32042167›Full record

ArticleNature biotechnology2020

Targeted nanopore sequencing with Cas9-guided adapter ligation.

Timothy Gilpatrick, Isac Lee, James E Graham, Etienne Raimondeau, Rebecca Bowen, Andrew Heron, Bradley Downs, Saraswati Sukumar, Fritz J Sedlazeck, Winston Timp

Open access · greenAbstract read
In one paragraph

Article in Nature biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 252 papers.

0numbers the graph read from it
0cells of the map it votes in
252citing papers in PubMed
25.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

252 citing papers in PubMed, 483 citations in OpenAlex.

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  12. Cell-type Specific Alteration ofbioRxiv : the preprint server for biology · 2026
    Article
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192 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Timothy GilpatrickDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.
Isac LeeDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.
James E GrahamOxford Nanopore Technologies, Oxford, UK.
Etienne RaimondeauOxford Nanopore Technologies, Oxford, UK.
Rebecca BowenOxford Nanopore Technologies, Oxford, UK.
Andrew HeronOxford Nanopore Technologies, Oxford, UK.
Bradley DownsDepartment of Oncology, Johns Hopkins School of Medicine, Baltimore, MD, USA.
Saraswati SukumarDepartment of Oncology, Johns Hopkins School of Medicine, Baltimore, MD, USA.ORCID http://orcid.org/0000-0002-5656-6703
Fritz J SedlazeckHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0000-0001-6040-2691
Winston TimpDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA. wtimp@jhu.edu.ORCID http://orcid.org/0000-0003-2083-6027
Johns Hopkins University · USOxford Nanopore Technologies (United Kingdom) · GBBaylor College of Medicine · US

Funding

Medical Scientist Training ProgramT32GM136577 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI ANDREA L COX · 2020 to 2026
$13.4M
BIOMEDICAL ENGINEERING TRAINING PROGRAMT32GM007057 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI KANOLD, PATRICK O, KARCHIN, RACHEL · 1985 to 2023
$10.4M
Nanopore based profiling of epigenetic stateR01HG009190 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI TIMP, WINSTON GEORGE · 2017 to 2024
$4.8M
T32: Predoctoral and Postdoctoral Training Program in Nanotechnology for Cancer ResearchT32CA153952 · NCI · JOHNS HOPKINS UNIVERSITY · PI Denis Wirtz · 2015 to 2026
$3.5M
T-32 NIH Postdoctoral Training Program in Nanotechnology for Cancer Medicine NTCMT32CA130840 · NCI · JOHNS HOPKINS UNIVERSITY · PI WIRTZ, DENIS · 2008 to 2012
$1.2M
NCI NIH HHS T32 CA130840NCI NIH HHS T32 CA153952NHGRI NIH HHS R01 HG009190NIGMS NIH HHS T32 GM007057NIGMS NIH HHS T32 GM136577
6 · The paper itself

Abstract

Despite recent improvements in sequencing methods, there remains a need for assays that provide high sequencing depth and comprehensive variant detection. Current methods

Indexed as

AnimalsCells, CulturedChromosomes, HumanCRISPR-Associated Protein 9Genetic LociGenetic VariationGenotypeHigh-Throughput Nucleotide SequencingHumansNanopore SequencingRNA, Guide, CRISPR-Cas SystemsSequence Analysis, DNACRISPR-Associated Protein 9RNA, Guide, CRISPR-Cas Systems

Identifiers

PMID32042167
PMCPMC7145730
OpenAlexW3004807164

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.