Evidence map›Paper›PMID 32042046›Full record

ArticleScientific reports2020

Genetic Analysis of Agronomic Traits and Grain Iron and Zinc Concentrations in a Doubled Haploid Population of Rice (Oryza sativa L.).

Mark Ian C Calayugan, Andrea Kariza Formantes, Amery Amparado, Gwen Iris Descalsota-Empleo, Chau Thanh Nha, Mary Ann Inabangan-Asilo, Zin Mar Swe, Jose E Hernandez, Teresita H Borromeo, Antonio G Lalusin and 5 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 2 pooled it
12.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 2 syntheses or guidelines pooled it, 76 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Review
  5. Article
  6. Genomic prediction and QTL analysis for grain Zn content and yield inJournal of plant biochemistry and biotechnology · 2024
    Article
  7. Article
  8. Review
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  13. OsNAC15 Regulates Tolerance to Zinc Deficiency and Cadmium by Binding toInternational journal of molecular sciences · 2022
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Genetic determinants of micronutrient traits in graminaceous crops to combat hidden hunger.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Review
  20. Crop breeding for a changing climate: integrating phenomics and genomics with bioinformatics.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 3 countries.

Mark Ian C CalayuganInternational Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines.
Andrea Kariza FormantesInternational Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines.
Amery AmparadoInternational Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines.
Gwen Iris Descalsota-EmpleoInternational Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines.
Chau Thanh NhaInternational Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines.
Mary Ann Inabangan-AsiloInternational Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines.
Zin Mar SweInternational Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines.
Jose E HernandezUniversity of the Philippines Los Baños, Laguna, 4031, Philippines.
Teresita H BorromeoUniversity of the Philippines Los Baños, Laguna, 4031, Philippines.
Antonio G LalusinUniversity of the Philippines Los Baños, Laguna, 4031, Philippines.
Merlyn S MendioroUniversity of the Philippines Los Baños, Laguna, 4031, Philippines.
Ma Genaleen Q DiazUniversity of the Philippines Los Baños, Laguna, 4031, Philippines.
Celia B Dela ViñaUniversity of the Philippines Los Baños, Laguna, 4031, Philippines.
Russell ReinkeInternational Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines.
B P Mallikarjuna SwamyInternational Rice Research Institute (IRRI), DAPO Box 7777, Metro Manila, Philippines. m.swamy@irri.org.
University of the Philippines Los Baños · PHInternational Rice Research Institute · PHUniversity of Southern Mindanao · PH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The development of micronutrient dense rice varieties with good agronomic traits is one of the sustainable and cost-effective approaches for reducing malnutrition. Identification of QTLs for high grain Fe and Zn, yield and yield components helps in precise and faster development of high Fe and Zn rice. We carried out a three-season evaluation using IR05F102 x IR69428 derived doubled-haploid population at IRRI. Inclusive composite interval mapping was carried out using SNP markers and Best Linear Unbiased Estimates of the phenotypic traits. A total of 23 QTLs were identified for eight agronomic traits and grain Fe and Zn concentration that explained 7.2 to 22.0% PV. A QTL by environment interaction analysis confirmed the stability of nine QTLs, including two QTLs for Zn on chromosomes 5 and 12. One epistatic interaction for plant height was significant with 28.4% PVE. Moreover, five QTLs were identified for Fe and Zn that harbor several candidate genes, e.g. OsZIP6 on QTL qZn

Indexed as

Chromosome MappingChromosomes, PlantEdible GrainGenetic MarkersGenotyping TechniquesHaploidyHaplotypesIronMicronutrientsOryzaPlant BreedingPolymorphism, Single NucleotideQuantitative Trait LociZincGenetic MarkersIronMicronutrientsZinc

Identifiers

PMID32042046
PMCPMC7010768
OpenAlexW3004700809

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.