Evidence map›Paper›PMID 32041886›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

High-resolution neutron crystallography visualizes an OH-bound resting state of a copper-containing nitrite reductase.

Yohta Fukuda, Yu Hirano, Katsuhiro Kusaka, Tsuyoshi Inoue, Taro Tamada

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
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  4. Improved joint X-ray and neutron refinement procedure in Phenix.Acta crystallographica. Section D, Structural biology · 2023
    Article
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  8. Review
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  10. Semi-empirical model to estimate ideal conditions for the growth of large protein crystals.Acta crystallographica. Section D, Structural biology · 2020
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Yohta FukudaGraduate School of Pharmaceutical Science, Osaka University, Suita, 565-0871 Osaka, Japan.ORCID 0000-0002-7386-8201
Yu HiranoInstitute for Quantum Life Science, National Institutes for Quantum and Radiological Science and Technology, 319-1106 Tokai, Ibaraki, Japan.
Katsuhiro KusakaFrontier Research Center for Applied Atomic Sciences, Ibaraki University, 319-1106 Tokai, Ibaraki, Japan.
Tsuyoshi InoueGraduate School of Pharmaceutical Science, Osaka University, Suita, 565-0871 Osaka, Japan; t_inoue@phs.osaka-u.ac.jp tamada.taro@qst.go.jp.ORCID 0000-0001-5337-5066
Taro TamadaInstitute for Quantum Life Science, National Institutes for Quantum and Radiological Science and Technology, 319-1106 Tokai, Ibaraki, Japan; t_inoue@phs.osaka-u.ac.jp tamada.taro@qst.go.jp.ORCID 0000-0003-1419-8022
National Institutes for Quantum Science and Technology · JPThe University of Osaka · JPIbaraki University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Copper-containing nitrite reductases (CuNIRs) transform nitrite to gaseous nitric oxide, which is a key process in the global nitrogen cycle. The catalytic mechanism has been extensively studied to ultimately achieve rational control of this important geobiochemical reaction. However, accumulated structural biology data show discrepancies with spectroscopic and computational studies; hence, the reaction mechanism is still controversial. In particular, the details of the proton transfer involved in it are largely unknown. This situation arises from the failure of determining positions of hydrogen atoms and protons, which play essential roles at the catalytic site of CuNIRs, even with atomic resolution X-ray crystallography. Here, we determined the 1.50 Å resolution neutron structure of a CuNIR from

Indexed as

Catalytic DomainCopperCrystallizationCrystallographyGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicGeobacillusModels, MolecularNitrite ReductasesProtein ConformationCopperNitrite Reductasescopper-containing nitrite reductaseneutron crystallographystructural biology

Identifiers

PMID32041886
PMCPMC7049163
OpenAlexW3006289428

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.