Evidence map›Paper›PMID 32041662›Full record

ArticleClinical epigenetics2020

Epigenetic age acceleration of cervical squamous cell carcinoma converged to human papillomavirus 16/18 expression, immunoactivation, and favourable prognosis.

Xiaofan Lu, Yujie Zhou, Jialin Meng, Liyun Jiang, Jun Gao, Xiaole Fan, Yanfeng Chen, Yu Cheng, Yang Wang, Bing Zhang and 2 more

Open access · goldAbstract read
In one paragraph

Article in Clinical epigenetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Xiaofan LuState Key Laboratory of Natural Medicines, China Pharmaceutical University, Nanjing, People's Republic of China.
Yujie ZhouDivision of Gastroenterology and Hepatology, Key Laboratory of Gastroenterology and Hepatology, Ministry of Health, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai Institute of Digestive Disease, Shanghai, People's Republic of China.
Jialin MengDepartment of Urology, The First Affiliated Hospital of Anhui Medical University; Institute of Urology & Anhui Province Key Laboratory of Genitourinary Diseases, Anhui Medical University, Hefei, Anhui, People's Republic of China.
Liyun JiangState Key Laboratory of Natural Medicines, China Pharmaceutical University, Nanjing, People's Republic of China.
Jun GaoState Key Laboratory of Natural Medicines, China Pharmaceutical University, Nanjing, People's Republic of China.
Xiaole FanSchool of Medicine, Nantong University, Nantong, People's Republic of China.
Yanfeng ChenSchool of Medicine, Nantong University, Nantong, People's Republic of China.
Yu ChengState Key Laboratory of Natural Medicines, China Pharmaceutical University, Nanjing, People's Republic of China.
Yang WangDepartment of Radiology, The Affiliated Nanjing Drum Tower Hospital of Nanjing University Medical School, Nanjing, People's Republic of China.
Bing ZhangDepartment of Radiology, The Affiliated Nanjing Drum Tower Hospital of Nanjing University Medical School, Nanjing, People's Republic of China.
Hangyu YanState Key Laboratory of Natural Medicines, China Pharmaceutical University, Nanjing, People's Republic of China. hyyan2050@163.com.
Fangrong YanState Key Laboratory of Natural Medicines, China Pharmaceutical University, Nanjing, People's Republic of China. f.r.yan@163.com.ORCID 0000-0003-3347-5021
China Pharmaceutical University · CNNanjing Drum Tower Hospital · CNNantong University · CNAnhui Medical University · CNShanghai Jiao Tong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAgeing-associated molecular changes have been assumed to trigger malignant transformations and the epigenetic clock, and the DNA methylation age has been shown to be highly correlated with chronological age. However, the associations between the epigenetic clock and cervical squamous cell carcinoma (CSCC) prognosis, other molecular characteristics, and clinicopathological features have not been systematically investigated. To this end, we computed the DNA methylation (DNAm) age of 252 CSCC patients and 200 normal samples from TCGA and three external cohorts by using the Horvath clock model. We characterized the differences in human papillomavirus (HPV) 16/18 expression, pathway activity, genomic alteration, and chemosensitivity between two DNAm age subgroups. We then used Cox proportional hazards regression and restricted cubic spline (RCS) analysis to assess the prognostic value of epigenetic acceleration.

resultsDNAm age was significantly associated with chronological age, but it was differentiated between tumour and normal tissue (P < 0.001). Two DNAm age groups, i.e. DNAmAge-ACC and DNAmAge-DEC, were identified; the former had high expression of the E6/E7 oncoproteins of HPV16/18 (P < 0.05), an immunoactive phenotype (all FDRs < 0.05 in enrichment analysis), CpG island hypermethylation (P < 0.001), and lower mutation load (P = 0.011), including for TP53 (P = 0.002). When adjusted for chronological age and tumour stage, every 10-year increase in DNAm age was associated with a 12% decrease in fatality (HR 0.88, 95% CI 0.78-0.99, P = 0.03); DNAmAge-ACC had a 41% lower mortality risk and 47% lower progression rate than DNAmAge-DEC and was more likely to benefit from chemotherapy. RCS revealed a positive non-linear association between DNAm age and both mortality and progression risk (both, P < 0.05).

conclusionsDNAm age is an independent predictor of CSCC prognosis. Better prognosis, overexpression of HPV E6/E7 oncoproteins, and higher enrichment of immune signatures were observed in DNAmAge-ACC tumours.

Indexed as

AccelerationAdjuvants, ImmunologicAdultAgedAgingCarcinoma, Squamous CellCpG IslandsDNA MethylationEpigenesis, GeneticEpigenomicsFemaleHuman papillomavirus 16Human papillomavirus 18HumansMiddle AgedNeoplasm StagingAdjuvants, ImmunologicOncogene ProteinsCervical squamous cell carcinomaEpigenetic age accelerationHuman papillomavirusImmunoactivationPrognosis

Identifiers

PMID32041662
PMCPMC7011257
OpenAlexW3010440717

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.