Evidence map›Paper›PMID 32041543›Full record

ArticleBMC genomics2020

Genome-wide identification of MAPKKK genes and their responses to phytoplasma infection in Chinese jujube (Ziziphus jujuba Mill.).

Zhiguo Liu, Lixin Wang, Chaoling Xue, Yuetong Chu, Weilin Gao, Yitong Zhao, Jin Zhao, Mengjun Liu

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Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

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6citing papers in PubMed
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6 citing papers in PubMed.

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5 · Who and what money

Authors and funding

8 authors.

Zhiguo LiuCollege of Horticulture, Hebei Agricultural University, Baoding, China.
Lixin WangCollege of Horticulture, Hebei Agricultural University, Baoding, China.
Chaoling XueCollege of Life Science, Hebei Agricultural University, Baoding, China.
Yuetong ChuCollege of Horticulture, Hebei Agricultural University, Baoding, China.
Weilin GaoCollege of Life Science, Hebei Agricultural University, Baoding, China.
Yitong ZhaoCollege of Life Science, Hebei Agricultural University, Baoding, China.
Jin ZhaoCollege of Life Science, Hebei Agricultural University, Baoding, China. zhaojinbd@126.com.
Mengjun LiuCollege of Horticulture, Hebei Agricultural University, Baoding, China. lmj1234567@aliyun.com.

Funding

Funds for Hebei Distinguished Young Scholar C2016204145Funds for Young Talent Project of Hebei Agricultural University Foundation YJ201853Green Channel Fund of Hebei Province Natural Science Foundation C2019204308Significance Fund of Hebei Province Natural Science Foundation C2017204114Youth Fund of Hebei Province Natural Science Foundation C2016204157
6 · The paper itself

Abstract

backgroundMitogen-activated protein kinase (MAPK) cascades play vital roles in signal transduction in response to a wide range of biotic and abiotic stresses. In a previous study, we identified ten ZjMAPKs and five ZjMAPKKs in the Chinese jujube genome. We found that some members of ZjMAPKs and ZjMAPKKs may play key roles in the plant's response to phytoplasma infection. However, how these ZjMAPKKs are modulated by ZjMAPKKKs during the response process has not been elucidated. Little information is available regarding MAPKKKs in Chinese jujube.

resultsA total of 56 ZjMAPKKKs were identified in the jujube genome. All of these kinases contain the key S-TKc (serine/threonine protein kinase) domain, which is distributed among all 12 chromosomes. Phylogenetic analyses show that these ZjMAPKKKs can be classified into two subfamilies. Specifically, 41 ZjMAPKKKs belong to the Raf subfamily, and 15 belong to the MEKK subfamily. In addition, the ZjMAPKKKs in each subfamily share the same conserved motifs and gene structures. Only one pair of ZjMAPKKKs (15/16, on chromosome 5) was found to be tandemly duplicated. Using qPCR, the expression profiles of these MAPKKKs were investigated in response to infection with phytoplasma. In the three main infected tissues (witches' broom leaves, phyllody leaves, and apparently normal leaves), ZjMAPKKK26 and - 45 were significantly upregulated, and ZjMAPKKK3, - 43 and - 50 were significantly downregulated. ZjMAPKKK4, - 10, - 25 and - 44 were significantly and highly induced in sterile cultivated tissues infected by phytoplasma, while ZjMAPKKK6, - 7, - 17, - 18, - 30, - 34, - 35, - 37, - 40, - 41, - 43, - 46, - 52 and - 53 were significantly downregulated.

conclusionsFor the first time, we present an identification and classification analysis of ZjMAPKKKs. Some ZjMAPKKK genes may play key roles in the response to phytoplasma infection. This study provides an initial understanding of the mechanisms through which ZjMAPKKKs are involved in the response of Chinese jujube to phytoplasma infection.

Indexed as

PhytoplasmaZiziphusDown-RegulationGene Expression Regulation, PlantMAP Kinase Kinase KinasesPhylogenyPlant DiseasesPlant ImmunityPlant ProteinsMAP Kinase Kinase KinasesPlant ProteinsChinese jujubeExpression profilesJujube witches’ broomMAPKKKsPhytoplasma

Identifiers

PMID32041543
PMCPMC7011567

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.