Evidence map›Paper›PMID 32041527›Full record

ArticleBMC genetics2020

Genotype-by-environment interaction in coast redwood outside natural distribution - search for environmental cues.

Jaroslav Klápště, Dean Meason, Heidi S Dungey, Emily J Telfer, Paul Silcock, Simon Rapley

Abstract read
In one paragraph

Article in BMC genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jaroslav KlápštěScion (New Zealand Forest Research Institute Ltd.), 49 Sala Street, Rotorua, 3010, New Zealand. Jaroslav.Klapste@scionresearch.com.ORCID 0000-0001-5504-3735
Dean MeasonScion (New Zealand Forest Research Institute Ltd.), 49 Sala Street, Rotorua, 3010, New Zealand.
Heidi S DungeyScion (New Zealand Forest Research Institute Ltd.), 49 Sala Street, Rotorua, 3010, New Zealand.
Emily J TelferScion (New Zealand Forest Research Institute Ltd.), 49 Sala Street, Rotorua, 3010, New Zealand.
Paul SilcockNZ Forestry Ltd., 701A Pollen Street, Thames, 3500, New Zealand.
Simon RapleyThe New Zealand Redwood Company, P.O. Box 1343, Taupō, 3351, New Zealand.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEffective matching of genotypes and environments is required for the species to reach optimal productivity and act effectively for carbon sequestration. A common garden experiment across five different environments was undertaken to assess genotype x environment interaction (GxE) of coast redwood in order to understand the performance of genotypes across environments.

resultsThe quantitative genetic analysis discovered no GxE between investigated environments for diameter at breast height (DBH). However, no genetic component was detected at one environment possibly due to stressful conditions. The implementation of universal response function allowed for the identification of important environmental factors affecting species productivity. Additionally, this approach enabled us to predict the performance of species across the New Zealand environmental conditions.

conclusionsIn combination with quantitative genetic analysis which identified genetically superior material, the URF model can directly identify the optimal geographical regions to maximize productivity. However, the finding of ideally uncorrelated climatic variables for species with narrow ecological amplitude is rather challenging, which complicates construction of informative URF model. This, along with a small number of tested environments, tended to overfit a prediction model which resulted in extreme predictions in untested environments.

Indexed as

EnvironmentGene-Environment InteractionGenotypeQuantitative Trait, HeritableClimateGeographyNew ZealandSequoiaClimate changeClonal forestryGenotype x environment interactionSequoia sempervirensUniversal response function

Identifiers

PMID32041527
PMCPMC7011450

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.