Evidence map›Paper›PMID 32041469›Full record

ArticleRNA biology2020

Identification of RNA 3´ ends and termination sites in

Sarah J Berkemer, Lisa-Katharina Maier, Fabian Amman, Stephan H Bernhart, Julia Wörtz, Pascal Märkle, Friedhelm Pfeiffer, Peter F Stadler, Anita Marchfelder

Open access · hybridAbstract read
In one paragraph

Article in RNA biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
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  6. Development of ONT-cappable-seq to unravel the transcriptional landscape ofComputational and structural biotechnology journal · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 4 countries.

Sarah J BerkemerBioinformatics Group, Department of Computer Science - and Interdisciplinary Center for Bioinformatics, University of Leipzig, Leipzig, Germany.ORCID 0000-0003-2028-7670
Lisa-Katharina MaierBiology II, Ulm University, Ulm, Germany.ORCID 0000-0001-5834-9035
Fabian AmmanInstitute for Theoretical Chemistry, University of Vienna, Vienna, Austria.ORCID 0000-0002-8646-859X
Stephan H BernhartBioinformatics Group, Department of Computer Science - and Interdisciplinary Center for Bioinformatics, University of Leipzig, Leipzig, Germany.ORCID 0000-0002-5928-9449
Julia WörtzBiology II, Ulm University, Ulm, Germany.
Pascal MärkleBiology II, Ulm University, Ulm, Germany.
Friedhelm PfeifferComputational Biology Group, Max Planck Institute of Biochemistry, Martinsried, Germany.ORCID 0000-0003-4691-3246
Peter F StadlerBioinformatics Group, Department of Computer Science - and Interdisciplinary Center for Bioinformatics, University of Leipzig, Leipzig, Germany.ORCID 0000-0002-5016-5191
Anita MarchfelderBiology II, Ulm University, Ulm, Germany.ORCID 0000-0002-1382-1794
Universität Ulm · DEUniversity of Vienna · ATLeipzig University · DEMax Planck Institute for Mathematics in the Sciences · DEMax Planck Institute of Biochemistry · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Archaeal genomes are densely packed; thus, correct transcription termination is an important factor for orchestrated gene expression. A systematic analysis of RNA 3´ termini, to identify transcription termination sites (TTS) using RNAseq data has hitherto only been performed in two archaea,

Indexed as

3' Untranslated RegionsGene Expression Regulation, ArchaealAlgorithmsCluster AnalysisComputational BiologyGenome, ArchaealGenomicsHaloferax volcaniiMolecular Sequence AnnotationNucleotide MotifsOpen Reading FramesOperonRNA, ArchaealTranscription Termination, Genetic3' Untranslated RegionsRNA, Archaeal3´ UTRarchaeaHaloarchaeaHaloferax volcaniiRNA 3´ endsRNAseqTranscription termination

Identifiers

PMID32041469
PMCPMC7237163
OpenAlexW3005913713

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.