Evidence map›Paper›PMID 32041281›Full record

ArticleGenes2020

Comprehensive Genomic Analysis and Expression Profiling of the C2H2 Zinc Finger Protein Family Under Abiotic Stresses in Cucumber (

Yue Chen, Gang Wang, Jian Pan, Haifan Wen, Hui Du, Jingxian Sun, Keyan Zhang, Duo Lv, Huanle He, Run Cai and 1 more

Open access · goldAbstract read
In one paragraph

Article in Genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. CucumberHorticulture research · 2023
    Article
  11. Analysis of the C2H2 Gene Family in Maize (Life (Basel, Switzerland) · 2022
    Article
  12. Article
  13. C2H2 Zinc Finger Proteins Response to Abiotic Stress in Plants.International journal of molecular sciences · 2022
    Review
  14. Article
  15. Article
  16. Comparative genomic analysis of expansin superfamily gene members in zucchini and cucumber and their expression profiles under different abiotic stresses.Physiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Yue ChenSchool of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China.
Gang WangSchool of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China.
Jian PanSchool of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China.
Haifan WenSchool of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China.
Hui DuSchool of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China.
Jingxian SunSchool of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China.
Keyan ZhangSchool of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China.
Duo LvSchool of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China.
Huanle HeSchool of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China.
Run CaiSchool of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China.
Junsong PanSchool of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China.
Shanghai Jiao Tong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cucumber is one of the most important vegetables in the world. The C2H2 zinc finger protein (C2H2-ZFP) family plays an important role in the growth development and abiotic stress responses of plants. However, there have been no systematic studies on cucumber. In this study, we performed a genome-wide study of C2H2-ZFP genes and analyzed their chromosomal location, gene structure, conservation motif, and transcriptional expression. In total, 101 putative cucumber C2H2-ZFP genes were identified and divided into six groups (I-VI). RNA-seq transcriptome data on different organs revealed temporal and spatial expression specificity of the C2H2-ZFP genes. Expression analysis of sixteen selected C2H2-ZFP genes in response to cold, drought, salt, and abscisic acid (ABA) treatments by real-time quantitative polymerase chain reaction showed that C2H2-ZFP genes may be involved in different signaling pathways. These results provide valuable information for studying the function of cucumber C2H2-ZFP genes in the future.

Indexed as

Gene Expression Regulation, PlantTranscriptomeCucumis sativusCYS2-HIS2 Zinc FingersDroughtsGene Expression ProfilingGenome-Wide Association StudyGenomicsPlant ProteinsStress, PhysiologicalPlant Proteinsabiotic stressC2H2 zinc finger proteincucumberexpression pattern

Identifiers

PMID32041281
PMCPMC7074296
OpenAlexW3004518463

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.